Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M03
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.41 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -2

Query: 408 QVLEFKFPFNTKVGRNV---KPNKSVIPDDNSLPFDNNLYI*IFVIFHKPTLNIYL 250
           + +EF  PF  + G  +   KP++S        PF N L+I + V  H   L +YL
Sbjct: 531 EFIEFSKPFKYQ-GITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYL 585


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/54 (18%), Positives = 23/54 (42%)
 Frame = +3

Query: 180 YTTLYSYLHTCIFLVNQDTQSLYINICLMLVCEKSQIFIYINYCQKVNCCHRVL 341
           +TT   +  T   + N    +++  +C+  +      F+ +NY  +    H V+
Sbjct: 344 FTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHNVV 397


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/54 (18%), Positives = 23/54 (42%)
 Frame = +3

Query: 180 YTTLYSYLHTCIFLVNQDTQSLYINICLMLVCEKSQIFIYINYCQKVNCCHRVL 341
           +TT   +  T   + N    +++  +C+  +      F+ +NY  +    H V+
Sbjct: 313 FTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHNVV 366


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/54 (18%), Positives = 23/54 (42%)
 Frame = +3

Query: 180 YTTLYSYLHTCIFLVNQDTQSLYINICLMLVCEKSQIFIYINYCQKVNCCHRVL 341
           +TT   +  T   + N    +++  +C+  +      F+ +NY  +    H V+
Sbjct: 364 FTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHNVV 417


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/54 (18%), Positives = 23/54 (42%)
 Frame = +3

Query: 180 YTTLYSYLHTCIFLVNQDTQSLYINICLMLVCEKSQIFIYINYCQKVNCCHRVL 341
           +TT   +  T   + N    +++  +C+  +      F+ +NY  +    H V+
Sbjct: 313 FTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHNVV 366


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 69  TTKHMVKIMPHSIKFRCVKKPSC 1
           T KH +++ P +  + C K+ +C
Sbjct: 458 TLKHKIRVPPGTPIYECNKRCNC 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,519
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)