Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M01
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519...    27   5.5  

>10_08_0570 +
           18851451-18851723,18851894-18851928,18851929-18851998,
           18852089-18852187,18852276-18852365,18852430-18852920,
           18853015-18853102,18853204-18853245,18853548-18853574,
           18853817-18853996,18854249-18854416,18854501-18854710
          Length = 590

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 321 RKTGREWRQHLELTSSTKLLDLSIIIKLR-YTILRKRNKMK 202
           R  GRE R+ LEL      LD + +I  R Y ILRK + ++
Sbjct: 75  RSQGREGRRWLELREEGVSLDKNRMIPYRYYLILRKYHMIR 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,275,471
Number of Sequences: 37544
Number of extensions: 108743
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)