Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L24
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    28   0.80 
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   1.8  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    26   2.4  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    25   5.6  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   5.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   7.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.4  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   7.4  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    24   9.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    24   9.8  

>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 254 PPWISSRLSGWGLPIP 207
           P W  SR   WGLPIP
Sbjct: 479 PEWCISRQRAWGLPIP 494


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -1

Query: 317 SCQWTPSL*KLFRIATQCSAAPPWISSRLSGWGLPIP 207
           S  W P   +  R A     A  W  SR   WG PIP
Sbjct: 428 STHWVPQNIRDKRFANWLKNARDWNISRNRYWGTPIP 464


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 235 GCQVGVCRYHHPQTS 191
           GC + VCRY  P TS
Sbjct: 203 GCYISVCRYFRPGTS 217


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 170 PPTVNRTTGLRVVVSAN 220
           PPTVNRT G+ +V  +N
Sbjct: 279 PPTVNRTKGMILVGDSN 295


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -1

Query: 218 LPIPPPSDQSFC*RLVVGASFCSSAVQNQPLTSLGSKSGRLQP 90
           LPIPPPS+QS    +    S  SS  Q      L    G+  P
Sbjct: 88  LPIPPPSEQSLDTIIYRNPSVSSSQSQEPEEFFLPLDDGKKPP 130


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +1

Query: 10  ENEWVKARIIQDKVKYIWTSGRLCDFKGCNRPDLLPNEV 126
           +N W     + DK+  IW         G    D +PNE+
Sbjct: 853 KNYWGSISALCDKMSEIWADWVQRTSSGIQEEDTIPNEM 891


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 147 CSPEPAIDFVGKQIGTVATLEVTEA-S*SPNVLHLVLNDASFNPFIFASC 1
           C   P  D++  +  T  TLE+ ++ S + ++LH +    S +P  F SC
Sbjct: 607 CFQGPINDYMTYKASTALTLEIQDSKSNTEDLLHSI-QAFSRSPIAFMSC 655


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 366 PPEIRQIHQPKSKSLNL 416
           P E++QI QPK   LNL
Sbjct: 341 PREVKQIEQPKELVLNL 357


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 305 TPSL*KLFRIATQCSAAPPWIS 240
           TPS  K  +++  CS   PW++
Sbjct: 413 TPSFCKFAQVSDMCSTEIPWVN 434


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 242 SSRLSGWGLPIPPPSDQSFC*RLVVGASFCSSAVQNQP 129
           + +LS    P+PPPS  S     +   SFC    + QP
Sbjct: 173 AKQLSRLPTPLPPPSSSSLPTGTISTNSFCPYERKVQP 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,480
Number of Sequences: 5004
Number of extensions: 33230
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)