Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L24
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0013 - 99952-100413,100534-100704 29 2.4
01_01_0863 - 6724200-6724414,6726300-6726576,6726976-6727145,672... 29 2.4
11_01_0337 - 2519732-2521093 28 3.2
03_02_0833 + 11624018-11624062,11624156-11624193,11624310-116243... 28 3.2
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 28 3.2
02_05_0632 + 30490575-30490808,30490898-30491173,30491287-30491352 28 3.2
10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179... 28 4.2
06_03_1189 + 28271185-28271394,28272421-28273326 28 4.2
12_01_0364 + 2761529-2762452 27 5.6
04_01_0528 - 6917414-6919849 27 7.3
03_05_0858 + 28309266-28311143 27 7.3
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 27 7.3
01_01_0635 - 4795434-4795461,4795897-4797365 27 7.3
10_01_0294 + 3052598-3052759,3052817-3053311 27 9.7
06_03_0921 + 25949453-25949986,25950150-25950188,25950380-259504... 27 9.7
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 27 9.7
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216... 27 9.7
>07_01_0013 - 99952-100413,100534-100704
Length = 210
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 169 TTNRQQNDWSEGGGIGKPQPDNRELIQGGAAEHCVAI 279
TTNR G G G+ Q +R+ +QGG C I
Sbjct: 3 TTNRMLATKPRGDGKGREQGPSRQRLQGGHYAFCTTI 39
>01_01_0863 -
6724200-6724414,6726300-6726576,6726976-6727145,
6727250-6727526
Length = 312
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 205 GGIGKPQPDNRELIQGGAAEHCVAILNNFYNDGVHWHDVACHHV 336
GG GK + R + A CV + Y DGVH + A H++
Sbjct: 253 GGPGKYHYNTRIICGDEGATTCVDPSKSLYWDGVHLTEAAYHYI 296
>11_01_0337 - 2519732-2521093
Length = 453
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 295 NDGVHWHDVACHHVKPFVCEENDALLKYVRYT 390
N + HD+A HH K + NDAL + +T
Sbjct: 230 NPNICCHDIAFHHGKLYSINNNDALFVHEFFT 261
>03_02_0833 +
11624018-11624062,11624156-11624193,11624310-11624376,
11624770-11624887,11625361-11625507,11626178-11626221,
11627739-11627861
Length = 193
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +1
Query: 220 PQPDNRELIQGGAAEHCVAILNNFYNDGVHWHDVACHHVKPFVCEENDALLKYVRYTNPN 399
P P + G AE VA+ NFY G H + +C + + +Y + NP+
Sbjct: 108 PGPKGYKCTGGIMAEEAVALFRNFYEQGNPNAATCVHVIVIIICSQMNVQERY--WINPD 165
Query: 400 LRV 408
V
Sbjct: 166 KMV 168
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 308 WTPSL*KLFRIATQCSAAPPWISSRLSGWGLPIP 207
W PS + RI S+ W SR WG+PIP
Sbjct: 471 WIPSQAEN-RIVAMTSSRSDWCISRQRTWGVPIP 503
>02_05_0632 + 30490575-30490808,30490898-30491173,30491287-30491352
Length = 191
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 275 ATQCSAAPPWISSRLSGWGLPIPPPS 198
AT CS AP +RL G +PPPS
Sbjct: 3 ATACSTAPLLGGARLPAVGAALPPPS 28
>10_06_0078 +
10416950-10417174,10417595-10417679,10417782-10417900,
10418200-10418287,10419400-10419452,10419876-10420015,
10420094-10420166,10420243-10420311,10420632-10420844,
10422304-10422498,10422581-10422658,10423456-10423590
Length = 490
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 205 GGIGKPQPDNRELIQGGAAEHCVAILNNFYNDGVHWHDVACHHVKPFVCEENDALLKYVR 384
GGI + ++ GG AE C + ++ G H H++A + C E+ A +++ R
Sbjct: 213 GGILMCSATDMAVLAGGNAEVCFSKYGSYPLKGKHCHEMALRIL--LACIESHA-IRHKR 269
Query: 385 YTNPNLRV 408
Y P + V
Sbjct: 270 YIVPIISV 277
>06_03_1189 + 28271185-28271394,28272421-28273326
Length = 371
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +1
Query: 199 EGGGIGKPQPDNRELIQGGAAEHCVAILNNFYNDGVHWHDVACHHVKPFVCEE 357
EG G P R + G A E C D V W + HV C E
Sbjct: 310 EGDGAPPPAKKRRRAVAGVAGEECPVCFFQLETDLVAWPGCSVRHVFHGECLE 362
>12_01_0364 + 2761529-2762452
Length = 307
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -1
Query: 215 PIPPPSDQSFC*RLVVGASFCSSAVQNQPLTSLGSKSGRLQPLKSQRRPEVQ 60
P+ PP S C RL S C V L S + P+ S +P++Q
Sbjct: 175 PMAPPPSSSACVRLRNELSVCRVYVSTGTLRSFDRRPLDAPPVISHHQPQLQ 226
>04_01_0528 - 6917414-6919849
Length = 811
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 203 PSDQSFC*RLVVGASFCSSAVQNQP 129
P D++ C RL V FCS AV N+P
Sbjct: 383 PIDETECRRLCVIDCFCSVAVFNKP 407
>03_05_0858 + 28309266-28311143
Length = 625
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 85 FKGCNRPDLLPNEVN-GWFWTAELQKLAPTTNRQQNDWSEGGGIGKPQPDNRELIQ 249
F GC+R ++ + G W A LQ LA + G+G PQPD + +Q
Sbjct: 338 FAGCHRVHVVDFGIKQGMQWPALLQALALRPGGPPS--FRLTGVGPPQPDETDALQ 391
>02_01_0622 -
4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = -1
Query: 308 WTPSL*KLFRIATQCSAAPPWISSRLSGWGLPIP 207
W P K R A W SR WG P+P
Sbjct: 414 WVPDYVKEKRFHNWLEGARDWAVSRTRFWGTPLP 447
>01_01_0635 - 4795434-4795461,4795897-4797365
Length = 498
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 87 QGLQPSRFASQRS-QWLVLDCRTTEASTHHQPSTERLV*GWWYRQTPT*QPRTDPRWRC* 263
Q + P ++A + + V + ++ +S HH PS RL +W R+ T +PR R
Sbjct: 154 QIISPDKYARPSAIDYFVYNANSSSSSNHH-PSLTRLPVSYW-RRRDTLRPRIMSREGTC 211
Query: 264 TLRC 275
L C
Sbjct: 212 ILSC 215
>10_01_0294 + 3052598-3052759,3052817-3053311
Length = 218
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 199 EGGGIGKPQPDNRELIQGGAAEHCVAILNNFYNDGVHWHDVACHH 333
+G G+ Q D + +QGG + +F+N+ D A HH
Sbjct: 109 QGDGVHGVQGDGAQGLQGGNLNQNSDVAQDFFNNFQDRVDYAVHH 153
>06_03_0921 +
25949453-25949986,25950150-25950188,25950380-25950445,
25950526-25950669,25951416-25951612,25952281-25952443,
25952760-25952873,25953304-25953401,25953964-25954042,
25954356-25954514,25954690-25954779,25955790-25955923,
25956513-25956672,25956826-25956909,25957000-25957167,
25957321-25957446,25958088-25958225,25958311-25958414,
25958832-25958895,25959229-25959317,25959393-25959534,
25959937-25960000,25960085-25960152,25960399-25960521,
25960604-25960669,25960857-25960962,25961076-25961167,
25961243-25961344
Length = 1170
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = -1
Query: 308 WTPSL*KLFRIATQCSAAPPWISSRLSGWGLPIP 207
W P K R A W SR WG P+P
Sbjct: 472 WVPDYVKEKRFHNWLEGARDWAVSRSRFWGTPLP 505
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 254 PPWISSRLSGWGLPIPPPSDQSFC 183
PP S + S G +PP S Q FC
Sbjct: 615 PPRPSQQFSACGTMLPPSSSQPFC 638
>02_05_0665 -
30720842-30721003,30721290-30721448,30721555-30721687,
30722042-30722227,30722377-30722906
Length = 389
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 65 LQDASVTSRVATVPICFPTKSMAGSGLQNYRS*HPPPTVNRTTGLRVVV 211
++ A+ +S P+ P+ + AGSG N S PPP R + L ++
Sbjct: 1 MEAAAASSPSPEQPLLRPSAARAGSGSGNLSS-SPPPPAARPSRLAALI 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,139,791
Number of Sequences: 37544
Number of extensions: 266489
Number of successful extensions: 842
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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