Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L24
(461 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00052-1|AAK95880.2| 308|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 29 2.1
Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z84574-1|CAE54890.1| 577|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z73912-3|CAE18063.1| 828|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z73912-2|CAA98144.4| 859|Caenorhabditis elegans Hypothetical pr... 27 4.9
AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical ... 27 4.9
AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical ... 27 4.9
AB096633-1|BAC76733.1| 828|Caenorhabditis elegans leucyl-tRNA s... 27 4.9
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 6.5
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 6.5
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 27 6.5
AC024880-3|AAF60915.3| 675|Caenorhabditis elegans Hypothetical ... 27 8.6
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 27 8.6
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 27 8.6
>U00052-1|AAK95880.2| 308|Caenorhabditis elegans Hypothetical
protein K02F3.5 protein.
Length = 308
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 214 GKPQPDNRELIQGGAAEHCVAILNNFYNDGVHWHDVACHHVKPFVCEE 357
GK QPDN+E E+CV + + W D C +PFVC++
Sbjct: 269 GKKQPDNQE-----HNENCVEV-----DHSGQWTDKLCIITRPFVCKK 306
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +1
Query: 163 APTTNRQQNDWSEGGGIGKPQPDNRELIQGGAA-EHCVAILNNFYNDGVHWHDVACHHVK 339
AP +D G P+ Q AA E+C ++N+FY + H +
Sbjct: 569 APEETEDFHDLLNGTADDVPESHEALAQQKTAANEYCFTVINDFYQSHKTAQRILYDHTR 628
Query: 340 PFVCEENDALLKYV 381
F+C + +K V
Sbjct: 629 CFLCATKNCSVKIV 642
>Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 166 PTTNRQQNDWSEGGGIGKPQPDNRELIQGGAAEHCVAILNNFYNDGV 306
P +R+Q + G G P P N G A++ LN+FY DG+
Sbjct: 51 PIQHREQANAEFGQKEGSPDPKNMVAATGNASK---PSLNSFYADGL 94
>Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 166 PTTNRQQNDWSEGGGIGKPQPDNRELIQGGAAEHCVAILNNFYNDGV 306
P +R+Q + G G P P N G A++ LN+FY DG+
Sbjct: 51 PIQHREQANAEFGQKEGSPDPKNMVAATGNASK---PSLNSFYADGL 94
>Z84574-1|CAE54890.1| 577|Caenorhabditis elegans Hypothetical
protein F33E2.2c protein.
Length = 577
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 166 PTTNRQQNDWSEGGGIGKPQPDNRELIQGGAAEHCVAILNNFYNDGV 306
P +R+Q + G G P P N G A++ LN+FY DG+
Sbjct: 51 PIQHREQANAEFGQKEGSPDPKNMVAATGNASK---PSLNSFYADGL 94
>Z73912-3|CAE18063.1| 828|Caenorhabditis elegans Hypothetical
protein ZK524.3b protein.
Length = 828
Score = 27.5 bits (58), Expect = 4.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 248 WISSRLSGWGLPIP 207
W+ SR GWG PIP
Sbjct: 360 WVVSRQRGWGTPIP 373
>Z73912-2|CAA98144.4| 859|Caenorhabditis elegans Hypothetical
protein ZK524.3a protein.
Length = 859
Score = 27.5 bits (58), Expect = 4.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 248 WISSRLSGWGLPIP 207
W+ SR GWG PIP
Sbjct: 391 WVVSRQRGWGTPIP 404
>AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 166 PTTNRQQNDWSEGGGIGKPQPDNRELIQGGAAEHCVAILNNFYNDGV 306
P +R+Q + G G P P N G A++ LN+FY DG+
Sbjct: 51 PIQHREQANAEFGQKEGSPDPKNMVAATGNASK---PSLNSFYADGL 94
>AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 166 PTTNRQQNDWSEGGGIGKPQPDNRELIQGGAAEHCVAILNNFYNDGV 306
P +R+Q + G G P P N G A++ LN+FY DG+
Sbjct: 51 PIQHREQANAEFGQKEGSPDPKNMVAATGNASK---PSLNSFYADGL 94
>AB096633-1|BAC76733.1| 828|Caenorhabditis elegans leucyl-tRNA
synthetase (mitochondrial)protein.
Length = 828
Score = 27.5 bits (58), Expect = 4.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 248 WISSRLSGWGLPIP 207
W+ SR GWG PIP
Sbjct: 360 WVVSRQRGWGTPIP 373
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 323 ATSCQWTPSL*KLFRIATQCSAAPPWISSRLSGWGLPI 210
ATS TP+ + C++A W+ S SG G+P+
Sbjct: 2262 ATSSTGTPTT----NMTLNCNSASQWVVSSASGTGIPV 2295
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 323 ATSCQWTPSL*KLFRIATQCSAAPPWISSRLSGWGLPI 210
ATS TP+ + C++A W+ S SG G+P+
Sbjct: 2262 ATSSTGTPTT----NMTLNCNSASQWVVSSASGTGIPV 2295
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 323 ATSCQWTPSL*KLFRIATQCSAAPPWISSRLSGWGLPI 210
ATS TP+ + C++A W+ S SG G+P+
Sbjct: 2262 ATSSTGTPTT----NMTLNCNSASQWVVSSASGTGIPV 2295
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 323 ATSCQWTPSL*KLFRIATQCSAAPPWISSRLSGWGLPI 210
ATS TP+ + C++A W+ S SG G+P+
Sbjct: 2262 ATSSTGTPTT----NMTLNCNSASQWVVSSASGTGIPV 2295
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 254 PPWISSRLSGWGLPIPPP 201
PPW R WGLP PPP
Sbjct: 69 PPW--HRRPPWGLPPPPP 84
>AC024880-3|AAF60915.3| 675|Caenorhabditis elegans Hypothetical
protein Y97E10AR.1 protein.
Length = 675
Score = 26.6 bits (56), Expect = 8.6
Identities = 8/36 (22%), Positives = 23/36 (63%)
Frame = -3
Query: 438 YSKNWNNLSSDS*IWVGVSDVFQEGVVFLANKRFDV 331
+ +WNN+ +D+ +W ++VF + + +++F++
Sbjct: 397 FKLDWNNIQTDNFVWSATANVFIR-LQYQGSQKFEI 431
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 150 TTEASTHHQPSTERLV*GWWYRQTP 224
TT+++T +PST+ L GW R+ P
Sbjct: 241 TTKSTTWERPSTQPLPQGWEMRRDP 265
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 150 TTEASTHHQPSTERLV*GWWYRQTP 224
TT+++T +PST+ L GW R+ P
Sbjct: 241 TTKSTTWERPSTQPLPQGWEMRRDP 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,804,923
Number of Sequences: 27780
Number of extensions: 203864
Number of successful extensions: 582
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -