Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L23
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 31 0.15
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 28 1.1
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 28 1.1
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 26 3.3
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 26 3.3
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 26 4.4
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 7.6
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 7.6
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 7.6
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi... 25 7.6
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 7.6
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 30.7 bits (66), Expect = 0.15
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 83 GGNLAHVVGFDESSVLMLGDKK--RTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNY 256
GG L V G S +LGD+K R K S A+ + +P +F + ++G+ +S +
Sbjct: 168 GGQLEQVKGITYSLDALLGDEKLARLKRSHAIPSPDHIPHIRQEEFAK-LNGIHYSLQDL 226
Query: 257 LKLDGGKRKQFLQTAA 304
+ D G+R ++ A+
Sbjct: 227 MGHDHGERPSHVKDAS 242
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.9 bits (59), Expect = 1.1
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = -3
Query: 493 NNNRCHHRYDRWPLHSFIHLL-SSASNFFPLFREASRANAEWIHVCTCAFQH*LFPRHLL 317
+ N H + + LH + ++ ++S+ ++A+ + E I V T +FQ L
Sbjct: 672 STNDAHIMQENFSLHKALEVMRETSSDLDKQLKDATASQKELI-VQTSSFQKELVEERER 730
Query: 316 HDSVRCSLQELLSLASV*FQVVRRRKYETVDRLNEIN 206
H+++ LQE+ SL +V + + VD+ IN
Sbjct: 731 HNAISKRLQEIESLYRDRELLVTNLEDQLVDQTVTIN 767
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 27.9 bits (59), Expect = 1.1
Identities = 24/69 (34%), Positives = 34/69 (49%)
Frame = -1
Query: 210 SMQESDGSSNVALSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSGVTVTIDIDIPRF 31
S ESD S+ + S SDS+ +P +D S T+ AR +SG D P +
Sbjct: 87 SHDESDSMSSSSESDSDSVSSESNPKSYSDSS---TSSAR--SSSTSGSISLYDDYYPAY 141
Query: 30 SNNALNTTL 4
S+NA NT +
Sbjct: 142 SSNAPNTAI 150
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 122 SVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTN 253
++L DK++ E + LR + + + +QT++ + F ST+
Sbjct: 59 NILSNDDKRKWHEKDYLRNQYSVQIEDVLQHLQTIEKIPFESTS 102
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 26.2 bits (55), Expect = 3.3
Identities = 7/41 (17%), Positives = 25/41 (60%)
Frame = +1
Query: 406 EERSCSQTKVSV*KNEEAIDHICDDICYYYIFKIRARRFLC 528
++ + + K+++ ++ ++++H +C++Y + + A LC
Sbjct: 324 KDAAYQKLKLTIEESSKSVEHANQHVCFHYDYTLEADGSLC 364
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 355 CAFQH*LFPRHLLHDSVRCSLQELLSLA---SV*FQVVRRRKYETVDR 221
C FQ FP HLL + +R S +E S A S + R +K T+ +
Sbjct: 224 CLFQVRPFPNHLLINWIRASEEEKASSADRLSSALHISRDKKLTTISK 271
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.0 bits (52), Expect = 7.6
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 153 LKNQKRSEQR*NSHLTPALISFRRSTVSYFXXXXXXXXXEARESSSCRLQRTL 311
LKNQKRSE+R +T +I + + F EA S L+ L
Sbjct: 738 LKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKL 790
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.0 bits (52), Expect = 7.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 227 DGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTREQLVLECTCTYV 367
D + S+ N L L+ G KQFL+ AA ++ + T +YV
Sbjct: 672 DAFIESAKNILILEMGSDKQFLRRAAVQLLDSCKHLPDSVITTLSYV 718
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 484 RCHHRYDRWPLHSFIHLLSS 425
RC RYDR L+S+ LLSS
Sbjct: 855 RCMRRYDRIRLNSYKLLLSS 874
>SPBC215.11c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 25.0 bits (52), Expect = 7.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 74 LKCGGNLAHVVGFDESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 229
+K G + + +GF V G K+ EA ATL+ + I+F+ T D
Sbjct: 18 VKVGDMVVNRMGFGAMRVTGDGIWDEPKDKEACIATLKRLPELNINFIDTAD 69
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 448 NEEAIDHICDDICYYYIFKIRA 513
++EA+ +C + Y+Y F IRA
Sbjct: 674 SDEALARLCREFQYFYPFDIRA 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,467
Number of Sequences: 5004
Number of extensions: 39721
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -