Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L23
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 29 2.5
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 29 2.5
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 28 4.4
07_03_0874 - 22202699-22203070,22204239-22204874 28 5.9
03_06_0445 - 33982018-33982965,33984308-33984463 28 5.9
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945... 28 5.9
11_02_0020 + 7429898-7430131,7432565-7432669,7434535-7434621,743... 27 7.7
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834... 27 7.7
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 125 VLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNYLKL 265
V+ GDK +ES +T+ LPS C D V + ST L L
Sbjct: 198 VIECGDKVAQQESSTQESTVSLPSSECGDKVAQQESSTQESTVSLPL 244
>01_03_0200 +
13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 77 KCGGNLAHVVGFDESSVLMLGDKKRT-KESEALRATLELPSDSCIDFVQTVDGLVFSSTN 253
+ GG+LA++V VL D+ K EAL+ +E D ++F+ V L+F
Sbjct: 767 RAGGDLANLV--HPGDVLHTTDELTDRKRREALQKAMEGKLDESLEFLAGVTALLFLGLE 824
Query: 254 YLKLDG 271
L L+G
Sbjct: 825 GLALEG 830
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 427 SASNFFPLFREASRANAEWIHVCTCA--FQH*LFPRHLLHDSVRCSLQELLSLA 272
S ++FFP F + R ++W+ T Q+ LF H L D+V C E LA
Sbjct: 577 SYAHFFPDFNRSPRITSDWLRPSTFEGDLQYILF-FHKLMDTVECGNTEDTVLA 629
>07_03_0874 - 22202699-22203070,22204239-22204874
Length = 335
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 174 LSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSG 67
++A+ L L L+PS TD S P + A+ P + SSG
Sbjct: 5 VAAALLLALLLAPSAATDVPSYPLSQAQSPANTSSG 40
>03_06_0445 - 33982018-33982965,33984308-33984463
Length = 367
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 155 KESEALRATLELP-SDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTR 331
K ++A + P +D C+D ++ + GL ++ + GKR ++L H+ +Q M
Sbjct: 14 KAADAAAGADDSPEADRCLDAMRRLRGLRVTTDVLVSTQVGKRLRYLTKHPHSDIQSMAT 73
Query: 332 EQL 340
+ L
Sbjct: 74 DLL 76
>01_05_0033 +
17390571-17390894,17394152-17394199,17394479-17394526,
17395224-17395400,17395492-17395642,17395742-17395828,
17397236-17397360,17397608-17397726,17399983-17400082,
17400188-17400223
Length = 404
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 457 PLHSFIHLLSSASNFFPLFREASRANAE 374
PLH ++ + +S F P F EA R N E
Sbjct: 141 PLHKELYKMRPSSFFLPTFLEAIRTNTE 168
>11_02_0020 +
7429898-7430131,7432565-7432669,7434535-7434621,
7435188-7435241,7435338-7435483,7435593-7435719,
7436200-7436208
Length = 253
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 287 FLQTAAHAIMQKMTREQLVLECTCTYVDP 373
+L+ +A+A +TREQL + TC V P
Sbjct: 151 YLEESAYASQVLLTREQLERQYTCNEVQP 179
>02_04_0546 -
23782400-23782599,23782744-23782830,23782923-23783442,
23783801-23784000,23784457-23784561,23784923-23785020,
23785168-23785271
Length = 437
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 232 SRIFVDELLE---TRRRQEKAVPADCSARYHAEDDEGTTSAGMHMYIRGSIPRSL 387
+R+F+ LLE + + + V A+CS+ +E +TS G H ++ S + +
Sbjct: 298 ARVFMQNLLEVPCSENKSDSQVAANCSSEDIDPANESSTSNGNHSDVQESCHKDI 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,133,087
Number of Sequences: 37544
Number of extensions: 270231
Number of successful extensions: 788
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -