Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L22
(420 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 28 0.51
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 27 1.2
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 1.2
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 1.2
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 26 2.1
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 25 3.6
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 24 8.4
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 24 8.4
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 24 8.4
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 24 8.4
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 24 8.4
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 28.3 bits (60), Expect = 0.51
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 167 PETGWSKNCPRCQGILEKYTIGT*IIRMTYKLML*IMKIVLVHHFRISF 313
P+T S+N RC+ +L I I +T K + + KI LV R SF
Sbjct: 3 PQTKLSENSSRCEKVLYSEVITQLIYFLTSKKITNLGKIRLVKSIRDSF 51
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 1.2
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Frame = +1
Query: 172 NRLEQE--LPPLSGNTGKIYNRNLNYTYD-LQTYALNNEDRAG--------TPFSDFFSE 318
NR+EQ + L KI+N + T L T AL++ED G + DF +E
Sbjct: 425 NRVEQSALVAFLESKQIKIHNDLADETQQTLLTSALDDEDEEGDEEMEEALSEDEDFQAE 484
Query: 319 SETDTPDFHSEESDSS 366
SE+D + + E ++SS
Sbjct: 485 SESDVAEEYDENAESS 500
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 27.1 bits (57), Expect = 1.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 292 YQHDLHYLKHKFVSHTYNSSSYCIFFQYSLTTGAILAPAC 173
Y+ H + H F SHT +++C Y L G A C
Sbjct: 465 YEKINHRIPHHFESHTNIGANWCCHCGYILPLGRKTARKC 504
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 250 DLQTYALNNEDRAGTPFSDFFSESETDTPDFHSEESDSSAGSA 378
D + + ++ED + + SD SES ++ D S SDS + S+
Sbjct: 271 DSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSS 313
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 2.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 298 FSDFFSESETDTPDFHSEE 354
+ DF SESE D+ + HSEE
Sbjct: 204 WDDFGSESEDDSKEAHSEE 222
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 3.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 151 YLVNNSIIYPYHFR 110
YLV NS +PYHF+
Sbjct: 238 YLVRNSSSHPYHFK 251
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 24.2 bits (50), Expect = 8.4
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -3
Query: 355 SLHYGSQECQSRFRKRNPKMVYQHDLHYLKHKFVSHTYNSSSYCIFFQYSLTTGAIL 185
SL + S E +S N +++ ++ K + H Y + C+FF S+ + AI+
Sbjct: 30 SLEFSSYE-ESNSPIENTEVLKVSEIEAKKRRRKKHRYIYLAVCLFFLASVLSCAII 85
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 24.2 bits (50), Expect = 8.4
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -2
Query: 419 WANIFVASAVFLHNAD----PALLS-LSSLWKSGVSVSLSEKKSE 300
W+ IF VFLH + PAL S L + K G V + K +E
Sbjct: 251 WSKIFAPEGVFLHVGEKFYRPALASTLEEIAKFGPEVFYTGKIAE 295
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 24.2 bits (50), Expect = 8.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 157 QQKSGNRLEQELPPLSGNTGKIYNRNLNYTYDLQTYALNNED 282
QQ LEQ++ L+ N + N DL+ NED
Sbjct: 540 QQSRSEELEQQISKLTDNLQEYRNTVRELKLDLEKSKKKNED 581
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 24.2 bits (50), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 182 SSLFPDFC*LIFGKQFNNLPIPFS 111
S + P C LIFGK+ N P P++
Sbjct: 439 SYVIPIACKLIFGKRLNYKPGPWN 462
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 24.2 bits (50), Expect = 8.4
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 244 TYDLQTYALNNEDRA--GTPFSDFFSESETDTPDFHSEESDSSAGSALCRNT 393
T L + LN+ D GT S+F S+T P+ E +S C N+
Sbjct: 85 TQALLSVLLNHSDEIDLGTTLSEFKDFSKTLPPELKGEALGNSEHIRCCHNS 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,882
Number of Sequences: 5004
Number of extensions: 37345
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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