Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L22
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584...    30   0.66 
05_01_0143 - 944169-947273                                             29   1.5  
05_01_0149 + 989698-991797                                             27   4.6  
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358     27   6.1  
07_01_0436 + 3317334-3317423,3317561-3317908,3317996-3318331,331...    27   6.1  
03_02_0686 + 10407800-10409501,10409611-10410284                       27   6.1  
01_03_0282 - 14580875-14580891,14582126-14585855                       27   6.1  

>05_02_0033 +
           5847754-5847982,5848308-5848437,5849038-5849116,
           5849194-5849251,5849732-5850795,5850899-5851003,
           5851369-5851473
          Length = 589

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = -3

Query: 415 LIFLSLLRYSYIMLIQHCCHSLHYGS-QECQSRFRKRNPKMVYQHDLHYLKHKFV---SH 248
           L+ + LL   YI+  +       YG+ Q+C+ R    NPK+        L HKFV   + 
Sbjct: 369 LMNIKLLPPHYIL--KRWTQEARYGTIQDCRGRNIIENPKLAAILSYKVLSHKFVNLATE 426

Query: 247 TYNSSSYCIFFQYSL 203
             NS   CI  + +L
Sbjct: 427 AANSEECCILIENTL 441


>05_01_0143 - 944169-947273
          Length = 1034

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 139 CLPNINQQKSGNRLEQELPPLSGNTGKIYNR 231
           CL N   +KS + LE+E P L+   G+ Y++
Sbjct: 343 CLENTELEKSLHELEEEKPALNSGPGESYSK 373


>05_01_0149 + 989698-991797
          Length = 699

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 100 FSIRENGMGKLLNCLPNINQQKSGNRL 180
           +S+R+ G G +L+CLP+  +++  NRL
Sbjct: 37  YSVRKGG-GGVLSCLPSSRRRRHSNRL 62


>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
          Length = 717

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 203 DNGGNSCSSLFPDFC 159
           DNGG  CS  F D+C
Sbjct: 480 DNGGEFCSDAFDDYC 494


>07_01_0436 +
           3317334-3317423,3317561-3317908,3317996-3318331,
           3318384-3318442,3318640-3318709,3319259-3319579
          Length = 407

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 302 RISFPKARLTLLTSIVKRVTAVLDQHY-VGIPQKRQKY 412
           R +FP  R+    + ++RV ++L QH  VG+ +   K+
Sbjct: 69  RATFPSCRMLNQQNFIRRVDSILQQHSGVGVERMEIKF 106


>03_02_0686 + 10407800-10409501,10409611-10410284
          Length = 791

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 151 INQQKSGNRLEQELPPLSGNTGKIYNRNLNY 243
           ++ Q S N L  E+PP  GN   ++  +L+Y
Sbjct: 184 VSLQLSSNNLSGEVPPTIGNLRMLHELSLSY 214


>01_03_0282 - 14580875-14580891,14582126-14585855
          Length = 1248

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 358 HSLHYGSQE--CQSRFRKRNPKMVYQHDLHYLKHKFVSHTYN 239
           H L Y S    C   FR R P ++    LH+L++  +SH++N
Sbjct: 571 HLLKYNSLRALCIPNFRGR-PCLIQAKHLHHLRYLNLSHSWN 611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,504,358
Number of Sequences: 37544
Number of extensions: 203639
Number of successful extensions: 625
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)