Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L22
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    31   0.33 
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    27   4.1  
U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav (...    27   5.5  
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (...    27   5.5  
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.      27   5.5  
AF067609-9|AAP82661.1|  278|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z79753-3|CAB02088.1|  377|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm rece...    27   7.2  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z66523-4|CAA91413.1|  429|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def...    26   9.5  
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def...    26   9.5  
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t...    26   9.5  

>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 295 PFSDFFSES----ETDTPDFHSEESDSSAGSALCRNTAEATKILA 417
           P SD  S S    +T+    ++E+SD  +GSAL RNT      +A
Sbjct: 80  PISDDISTSKVSLDTENQQLNNEDSDKISGSALSRNTPRQASFMA 124


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 418 GLIFLSLLRYSYIMLIQHCCHSLHYGSQECQSRFRKRNPKMVYQHDLHYLK-HKFVSHTY 242
           G+I      +S+ + I+     LH  +Q  + +   R   +  Q ++H +K HKF++  +
Sbjct: 128 GIIHFPRFEFSHRLSIRPLLKRLHEQAQRIEGKAFVRRGAL-RQKNVHEIKSHKFIARFF 186

Query: 241 NSSSYC 224
              ++C
Sbjct: 187 KQPTFC 192


>U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform a protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = -3

Query: 364 CCHSLHYGSQECQSRFRKRNPKMVYQHDLHYLKH--------KFVSHTYNSSS 230
           CC++++Y +  C++ F   +  +    DL+Y+           F+SHT  S S
Sbjct: 70  CCNNINYFAMFCKTYFNLEDADLFTAEDLYYMNGFQKVLKTLSFLSHTKESLS 122


>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform b protein.
          Length = 1007

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = -3

Query: 364 CCHSLHYGSQECQSRFRKRNPKMVYQHDLHYLKH--------KFVSHTYNSSS 230
           CC++++Y +  C++ F   +  +    DL+Y+           F+SHT  S S
Sbjct: 102 CCNNINYFAMFCKTYFNLEDADLFTAEDLYYMNGFQKVLKTLSFLSHTKESLS 154


>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
          Length = 1007

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = -3

Query: 364 CCHSLHYGSQECQSRFRKRNPKMVYQHDLHYLKH--------KFVSHTYNSSS 230
           CC++++Y +  C++ F   +  +    DL+Y+           F+SHT  S S
Sbjct: 102 CCNNINYFAMFCKTYFNLEDADLFTAEDLYYMNGFQKVLKTLSFLSHTKESLS 154


>AF067609-9|AAP82661.1|  278|Caenorhabditis elegans Hypothetical
           protein C23H5.2 protein.
          Length = 278

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 172 NRLEQELPPLSGNTGKIYNRNLNYT-YDLQTYALNN--EDRAGTPFSDFFSESETDTPDF 342
           NR  QE   +   + K+ ++NLN+T Y++     N   + R   PF  F +   +   +F
Sbjct: 5   NRFSQEEKDILRRSWKVLDKNLNHTAYNIFEMIFNQSPDTRQLFPFMKFNTGGRSKEIEF 64

Query: 343 HS 348
           H+
Sbjct: 65  HA 66


>Z79753-3|CAB02088.1|  377|Caenorhabditis elegans Hypothetical
           protein F20G2.3 protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 305 ISFPKARLTLLTSIVKRVTAVLDQHYV 385
           I F K  +TLLT  +  ++A + +HYV
Sbjct: 154 IKFDKRTITLLTGGLSAISAFMAEHYV 180


>AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 68 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -3

Query: 412 IFLSLLRYSYIMLIQHCCHSLHYGSQECQSRFRKRNPKMVYQ 287
           I + L+   YI++I +CC  +H+  ++  ++F  +N K+  Q
Sbjct: 201 ICIFLIGIHYIIII-YCCLRMHFSMKKELAKFSTQNQKLQRQ 241


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 232  NLNYTYDLQTYAL--NNEDRAGTPFSDFFSESETDTPDFHSEE 354
            N  YT D   +A+  ++ +++GTPF  + S         H+ E
Sbjct: 1499 NCTYTKDFSGFAIFMSDSNKSGTPFQTYCSSINQQNISSHTNE 1541


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 232  NLNYTYDLQTYAL--NNEDRAGTPFSDFFSESETDTPDFHSEE 354
            N  YT D   +A+  ++ +++GTPF  + S         H+ E
Sbjct: 1499 NCTYTKDFSGFAIFMSDSNKSGTPFQTYCSSINQQNISSHTNE 1541


>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
           protein K04D7.5b protein.
          Length = 1287

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 265 ALNNEDRAGTPFSDFFSESETDTPDFHSEESDSSAGSALCRNTAE 399
           AL  EDR    F D   E + +  D + EE+D+S  + L   + E
Sbjct: 119 ALRIEDRGPKSFLDLEYEEDDEYDDDYIEENDTSTRNKLNAGSEE 163


>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
           protein K04D7.5a protein.
          Length = 1338

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 265 ALNNEDRAGTPFSDFFSESETDTPDFHSEESDSSAGSALCRNTAE 399
           AL  EDR    F D   E + +  D + EE+D+S  + L   + E
Sbjct: 119 ALRIEDRGPKSFLDLEYEEDDEYDDDYIEENDTSTRNKLNAGSEE 163


>Z66523-4|CAA91413.1|  429|Caenorhabditis elegans Hypothetical
           protein M05D6.4 protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 292 TPFSDFFSESETDTPDFHSEESDSSAGSALCRNTAEATKIL 414
           TPF  F      + PD H  E  +  G    R  AE  ++L
Sbjct: 284 TPFVQFVGAMTLNNPDLHRLEQAAVLGIGTARAMAEVFELL 324


>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoforma protein.
          Length = 1175

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 301 KMVYQHDLHYLKHKFVSHTYNSSS 230
           K +Y+ D+ Y  H+F+ H+ NSSS
Sbjct: 911 KKLYE-DVMYQMHRFMEHSVNSSS 933


>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoformb protein.
          Length = 1178

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 301 KMVYQHDLHYLKHKFVSHTYNSSS 230
           K +Y+ D+ Y  H+F+ H+ NSSS
Sbjct: 914 KKLYE-DVMYQMHRFMEHSVNSSS 936


>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
           c-terminal hydrolase protein.
          Length = 1175

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 301 KMVYQHDLHYLKHKFVSHTYNSSS 230
           K +Y+ D+ Y  H+F+ H+ NSSS
Sbjct: 911 KKLYE-DVMYQMHRFMEHSVNSSS 933


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,622,084
Number of Sequences: 27780
Number of extensions: 201288
Number of successful extensions: 616
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)