Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L21
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   3.3  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   4.3  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    25   5.7  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   5.7  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      24   9.9  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    24   9.9  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    24   9.9  

>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 432 FLYLFFGTCVSKVQYHVHNFYSELHF 355
           FL++ F  CV  V+Y+   F   L F
Sbjct: 37  FLFIIFANCVVDVKYYFEGFSHSLLF 62


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 133 CAMSERYSVGAIRF*ELSSVNN 68
           CA S RY  GA  F +LSS+N+
Sbjct: 323 CAFSHRYVDGANSFLKLSSLND 344


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 83  QFLKPYRAYRVSLAHSARCLNRCYNIK 163
           Q L P R Y +SLA     LN  YN++
Sbjct: 8   QSLPPTRRYTISLALPISSLNVAYNLQ 34


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 330 LEILFLESSNFTVRSLVRIFPRVRILLRS 244
           L + F+E  NF + S V ++  +R+ LRS
Sbjct: 370 LIVFFVELYNFQLVSCVLVYDLIRLFLRS 398


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 302 ILQSVPWCVFFPGFEFY*EVAAATTATFMILIMVLS 195
           IL +V W   FP F  Y  V +      M L++++S
Sbjct: 231 ILFAVHWFALFPIFRKYIHVFSFYADMLMTLVLIIS 266


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 413 VLVSPKYNIMYITSTLNSIFLL 348
           +L S   N++YITS LN + +L
Sbjct: 200 ILFSDSLNVLYITSVLNILPVL 221


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 319 VSRVIQFYSPFLGAYFSQGSN 257
           +S V Q Y+P +G Y S  S+
Sbjct: 469 LSTVFQLYNPVVGCYLSSSSS 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,495
Number of Sequences: 5004
Number of extensions: 34696
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)