Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L21
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410...    29   1.4  
06_01_0317 + 2281564-2283855                                           29   2.4  
07_03_1174 + 24538522-24538682,24539229-24539430,24539529-245396...    28   4.3  
03_03_0140 + 14771293-14771821,14772343-14772455,14772723-147728...    27   5.6  
11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125...    27   9.8  

>01_01_0558 +
           4098383-4098510,4100462-4100572,4100765-4100853,
           4100974-4101107,4101337-4101435,4102619-4102994,
           4103883-4104337,4104419-4107409
          Length = 1460

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 431 FCTCSLVLVSPKYNIMYITSTLNSIFLLEFDESFSR--FCFSSHPILQSVPWCV 276
           +C+   + ++P      +     S+FLL++DE ++   + F  HP++Q+   CV
Sbjct: 86  WCSILPLDLAPTGGPCKLQEVFRSVFLLQYDEQYASLIWTFHLHPLMQTGSACV 139


>06_01_0317 + 2281564-2283855
          Length = 763

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
 Frame = -2

Query: 401 PKYNIMYITSTLNSIFLL-EFDESFSRFCFSSHPILQSVPWCVFFPGFEFY*EVAAATTA 225
           P  N++  T+ +   F   E D +F    F   P+  SV WCV   GF  + E  +    
Sbjct: 194 PVRNVVSWTAMIKGHFTAHEVDMAFQ--LFKLMPVKNSVSWCVMIGGFVTH-EKFSEAVE 250

Query: 224 TFMILIMVLSEISSYASCTQP*YYNSGLNSVRYERAILG 108
            F  L+M   E+++         + +G+ S+R  R I G
Sbjct: 251 LFNSLMMNGEEVTNVILVKIVNAF-AGMKSIRGGRCIHG 288


>07_03_1174 +
           24538522-24538682,24539229-24539430,24539529-24539675,
           24539832-24539944,24540580-24540791,24541194-24541258,
           24541581-24541751,24542543-24542887,24542980-24543173,
           24543292-24543448,24543946-24544010,24544166-24544331
          Length = 665

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 251 NKIRTLGKIRTKERTVKLDDSRNKISRKIHRIPIEKWSSE 370
           N I+ +  I +KE     D  RNKI+RK + I   K SSE
Sbjct: 75  NHIKLMRSISSKE----YDSRRNKIARKFNSIYFNKGSSE 110


>03_03_0140 +
           14771293-14771821,14772343-14772455,14772723-14772830,
           14772931-14772973,14773454-14773593,14774216-14774446
          Length = 387

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 374 STLNSIFLLEFDESFSRFCFSS 309
           STL  ++    D+ FSR+CFSS
Sbjct: 337 STLRKMYPNRSDDDFSRYCFSS 358


>11_01_0150 +
           1256029-1256137,1256206-1256247,1256345-1256455,
           1256538-1256600,1256678-1256910,1256999-1257223,
           1257319-1257411,1257493-1257591,1257840-1257956
          Length = 363

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 249 RSSCSNDRYLHDSNNG 202
           RSSC  ++Y+ +SNNG
Sbjct: 43  RSSCGKNKYISNSNNG 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,285
Number of Sequences: 37544
Number of extensions: 194985
Number of successful extensions: 415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)