Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L21
(465 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032657-14|CAC42375.2| 190|Caenorhabditis elegans Hypothetical... 31 0.31
Z92777-4|CAB07170.1| 304|Caenorhabditis elegans Hypothetical pr... 27 5.0
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 27 6.6
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 27 6.6
AF039049-7|AAB94243.2| 300|Caenorhabditis elegans Serpentine re... 27 6.6
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 27 6.6
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 27 6.6
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 27 6.6
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 27 6.6
AF078790-11|AAC26937.1| 78|Caenorhabditis elegans Hypothetical... 27 8.8
>AL032657-14|CAC42375.2| 190|Caenorhabditis elegans Hypothetical
protein Y47H9C.15 protein.
Length = 190
Score = 31.5 bits (68), Expect = 0.31
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 279 APRNGL*NWMTRETKSRERFIEFQ*KNGVQSRSYVHDIVLW-RHKYQRTSTKSN 437
APR TR ++E+F E KN + R +V + + W HK TS + N
Sbjct: 35 APRKSAGGGPTRRQGAKEKFEEEATKNKARERKWVEEPIFWNHHKKFLTSLQKN 88
>Z92777-4|CAB07170.1| 304|Caenorhabditis elegans Hypothetical
protein C17H1.6 protein.
Length = 304
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 278 RTKERTVKLDDSRNKISRKIHRIPIEKWSSE*KL 379
RT E +KL + +NK+ R++ +E+W+ E K+
Sbjct: 102 RTNE--IKLGNQQNKVDRELRMHALEQWTPETKV 133
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 309 SSNFTVRSLVRIFPRVRILLRSSCSNDRYLHDSNN 205
SS L R+ + L RS C ND+ L D+N+
Sbjct: 101 SSQLETGELARVKEEMAELYRSKCQNDQRLIDANH 135
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 252 IKFEPWEKYAPRNGL*NWMTRETKSRERFI 341
+ F+ ++ A RNGL NW+ +T + FI
Sbjct: 1049 VHFDVRKRAAHRNGLSNWLGSQTPTTSNFI 1078
>AF039049-7|AAB94243.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein63 protein.
Length = 300
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -2
Query: 461 LSLVKFKHVTFCTCSLVLVSPKYNIMYITSTLNSIFLLEFDESFSRFCFSSHPILQSVPW 282
+S K H++ C L+LVS Y++ Y I FDE FS+ I V W
Sbjct: 109 ISYHKVFHLSQTKC-LILVSWMYSLTYAGLFYLRICHFRFDEQVQFLTFSNSRICMIVGW 167
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 252 IKFEPWEKYAPRNGL*NWMTRETKSRERFI 341
+ F+ ++ A RNGL NW+ +T + FI
Sbjct: 67 VHFDVRKRAAHRNGLSNWLGSQTPTTSNFI 96
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 252 IKFEPWEKYAPRNGL*NWMTRETKSRERFI 341
+ F+ ++ A RNGL NW+ +T + FI
Sbjct: 1047 VHFDVRKRAAHRNGLSNWLGSQTPTTSNFI 1076
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 252 IKFEPWEKYAPRNGL*NWMTRETKSRERFI 341
+ F+ ++ A RNGL NW+ +T + FI
Sbjct: 1047 VHFDVRKRAAHRNGLSNWLGSQTPTTSNFI 1076
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 252 IKFEPWEKYAPRNGL*NWMTRETKSRERFI 341
+ F+ ++ A RNGL NW+ +T + FI
Sbjct: 1047 VHFDVRKRAAHRNGLSNWLGSQTPTTSNFI 1076
>AF078790-11|AAC26937.1| 78|Caenorhabditis elegans Hypothetical
protein F36H12.15 protein.
Length = 78
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 446 FKHVTFCTCSLVLVSPKYNIMYITSTLNSIFLL 348
+ H+T TCSLV + P M+I S+ + F L
Sbjct: 2 YNHIT--TCSLVEIDPTTVYMFIKSSTTTTFTL 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,716,955
Number of Sequences: 27780
Number of extensions: 186206
Number of successful extensions: 508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -