Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L19
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...   108   2e-25
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   1.9  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   3.4  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    24   4.5  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   4.5  
SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|...    24   4.5  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    23   7.9  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    23   7.9  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    23   7.9  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score =  108 bits (259), Expect = 2e-25
 Identities = 48/72 (66%), Positives = 61/72 (84%)
 Frame = +3

Query: 93  KESAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLNKYL 272
           K+SAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T +VRVD  LNK +
Sbjct: 5   KKSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEV 64

Query: 273 WSKGVRNVPFRV 308
           W +G+RNVP R+
Sbjct: 65  WKRGIRNVPHRL 76


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 36  LQNSDERNSTTHGKPKERGKESAINEVVTREYTVNLHKRLH 158
           L +S   + T H   K  GK++   E  + +  + LHK LH
Sbjct: 54  LSHSTSSDITRHSNAKNSGKDTQFYEEPSSKQDIELHK-LH 93


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 105 INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 203
           INE VT +Y  N+   + G+G  ++A   +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +3

Query: 36   LQNSDERNSTTHGKPKERGKESAINEVVTREYTVNLHKRLHG 161
            L  S   +   HGK KERG    + + V +    + H    G
Sbjct: 965  LSESSSFDRWMHGKHKERGTTRKLEDFVMQLQRTSTHHEAEG 1006


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 221 TNGYSRRKSRYPPKQISLVKRSQE 292
           T G +  +SR PP+QIS+    +E
Sbjct: 83  TKGRAHPRSRRPPRQISIDSAKKE 106


>SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 102

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 113 FIYGRFLSSLLGFAMCRRISLVRILQPGSIF 21
           ++ G F  S L FA+  R +L +  QPG  F
Sbjct: 35  YVLGYFFVSFLLFALKMRGNLTKYYQPGYKF 65


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 141 NLPYIHE*RLHLWQIPFLSPWVC 73
           N+PYI     H + I F   W+C
Sbjct: 244 NMPYIEITSKHNYDIDFKYKWLC 266


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 39  QNSDERNSTTHGKPKERGKESAINEVVTREYTVNLHKRLHGVG 167
           ++S   +ST  G P    + +    + +R  +V+    L+GVG
Sbjct: 465 RSSTNHSSTNSGSPNLSRRNNLAIPIASRRKSVSAVNTLYGVG 507


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 54  RNSTTHGKPKERGKESAINEVVTREYT 134
           R S  H   KE+GK+S +   + +E T
Sbjct: 649 RISNLHKSSKEKGKDSQVRVALHKENT 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,524
Number of Sequences: 5004
Number of extensions: 29139
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)