Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L18
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   171   5e-44
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    33   0.024
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   2.7  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   4.8  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.8  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   6.3  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   6.3  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    25   6.3  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    25   6.3  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.4  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  171 bits (417), Expect = 5e-44
 Identities = 85/147 (57%), Positives = 106/147 (72%), Gaps = 1/147 (0%)
 Frame = +1

Query: 160 KKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 339
           K   NPLF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF 
Sbjct: 20  KTTKNPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQ 79

Query: 340 QTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANV-AKKDEPXPKRPNTLRAGTNTV 516
           +TLDK TA  +FK+L KYRPET A +K+RL   AEA    K  +   K+P  ++ G N V
Sbjct: 80  KTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHV 139

Query: 517 TKLVEKKKAQLVVIAHDVDPIELVLFL 597
             L+E KKA+LV+IA DVDPIELV+FL
Sbjct: 140 VALIEAKKAKLVLIASDVDPIELVVFL 166


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 33.5 bits (73), Expect = 0.024
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 493 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 597
           LR G N  TK + +  ++ +V+A D +PIE++L L
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHL 66


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 127 AAPLVVKNVEPKKIVNPLFEKRTKNFAIGQ 216
           AAPL + NV+  KI+   F K  K   +GQ
Sbjct: 547 AAPLPMANVDTDKIIPKQFLKTIKRTGLGQ 576


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 286 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 387
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 299 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 397
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +1

Query: 385 EKYRPETEAVRKERLKKAAEANVAKKDEPXPKRPNTLRAGTNTVTKLVEKKKAQLVVIAH 564
           E  R E+E      L    + N  +  E    +P+T+  GT+ +  + E K+  + ++  
Sbjct: 668 ENKRSESELTMSNVLSNEGDRN-EEGSEINSSQPSTINHGTDHINIVSENKETTVSLLHG 726

Query: 565 DVD 573
           DV+
Sbjct: 727 DVE 729


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 63  ELKSIQDGXXXXXXXDREKSSGRSTCGEER*A-QEDCKPSIREENKELC 206
           ELKS+ +G       D   S   S C +E+ +     KPS   + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 154 EPKKIVNPLFEKRTKNFAIGQDIQPTRDLSRFV 252
           E +K +   FE+R + FA    IQP  D+   V
Sbjct: 172 EQRKKLREEFERRNRMFASSARIQPNEDVQSVV 204


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 305 VSKCRRQSTSSPRH*IKPQPK-VCSRSW-RNTGQKLRQSGKSV*RKPPKPMLLRKMSRHR 478
           +++  RQ T  P+   + Q K + +R   R+  Q+ R++  S  R   K  L R+M R R
Sbjct: 103 IAQLIRQQTDPPQIIHRKQDKGLMARVLSRSKKQEERENHSSDARDAIKSALRRRM-RRR 161

Query: 479 KGQTPYALEPT 511
           +G+   AL PT
Sbjct: 162 EGRVQKALRPT 172


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +1

Query: 358 TAKGLFKILEKYR 396
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,282
Number of Sequences: 5004
Number of extensions: 43675
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)