Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L18
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 180 8e-46
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 178 2e-45
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 140 8e-34
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 33 0.17
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 32 0.40
11_06_0254 - 21721667-21721718,21722025-21722647 31 0.70
02_01_0433 + 3153802-3154064,3154149-3154713 30 1.6
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 2.1
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385... 29 2.1
03_06_0715 + 35693002-35694585 29 2.8
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 6.5
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 8.6
05_05_0095 - 22347552-22347696,22347988-22348094,22348114-223482... 27 8.6
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 27 8.6
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 180 bits (438), Expect = 8e-46
Identities = 89/156 (57%), Positives = 114/156 (73%)
Frame = +1
Query: 130 APLVVKNVEPKKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRL 309
AP+ K + +K+ NPLFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RL
Sbjct: 9 APVPAKK-KTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRL 67
Query: 310 KVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPXPKRPN 489
KVPP +NQFT+TLDK A LFK+L KYRPE +A +KERL K A+A K K+P
Sbjct: 68 KVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPI 126
Query: 490 TLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 597
++ G N VT L+E+ KAQLVVIAHDVDPIELV++L
Sbjct: 127 VVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWL 162
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 178 bits (434), Expect = 2e-45
Identities = 86/146 (58%), Positives = 109/146 (74%)
Frame = +1
Query: 160 KKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 339
+K+ NPLFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT
Sbjct: 2 EKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFT 61
Query: 340 QTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPXPKRPNTLRAGTNTVT 519
+TLDK A LFK+L KYRPE +A +KERL K A+A K K+P ++ G N VT
Sbjct: 62 RTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVT 120
Query: 520 KLVEKKKAQLVVIAHDVDPIELVLFL 597
L+E+ KAQLVVIAHDVDPIELV++L
Sbjct: 121 YLIEQSKAQLVVIAHDVDPIELVVWL 146
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 140 bits (339), Expect = 8e-34
Identities = 79/158 (50%), Positives = 99/158 (62%)
Frame = +1
Query: 124 AAAPLVVKNVEPKKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQR 303
A AP+ + VNPLFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++
Sbjct: 7 AKAPVPARKKAAAAAVNPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQ 66
Query: 304 RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPXPKR 483
RLKVPP +NQFT+TLDK +KERL K A+A K K+
Sbjct: 67 RLKVPPALNQFTRTLDKNL----------------GCQKERLLKRAQAEAEGKTVEA-KK 109
Query: 484 PNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 597
P ++ G + VT L+E+ KAQLVVIAHDVDPIELV++L
Sbjct: 110 PIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWL 147
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 493 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 597
L+ G N TK + + A+ VV+A D +P+E++L L
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHL 67
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 493 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 597
L+ G N TK + + ++ VV+A D +P+E++L L
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHL 69
>11_06_0254 - 21721667-21721718,21722025-21722647
Length = 224
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +1
Query: 319 PPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPXPKRPNTLR 498
PP++ F Q +K A ++ +RPE V +E +++ A + P +PN +
Sbjct: 98 PPMSGFAQEAEKERAGMSSTVMNGFRPEKVPVYRELVREFAVCDRWFASVPTSTQPNRMF 157
Query: 499 AGTNTVTKLVEKKKAQL 549
+ T LV QL
Sbjct: 158 VHSATSHGLVSNDGKQL 174
>02_01_0433 + 3153802-3154064,3154149-3154713
Length = 275
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 277 QRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVA 456
Q + + +R P PIN +K K L +ILEK+ E + +R+++ A V
Sbjct: 39 QSEMSKEDQRTSKPVPINSTMNKEEKWLDKSLDRILEKF----EQMEAKRMQEEATTAVL 94
Query: 457 KKDEP-XPKRPNT 492
K P P P T
Sbjct: 95 KATSPTAPMAPPT 107
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +1
Query: 199 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 366
N +GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 367 GLFKILEK 390
+L+K
Sbjct: 412 AAKDVLQK 419
>10_08_0452 -
18038182-18038253,18038338-18038415,18038502-18038579,
18039112-18039168,18039276-18039349,18039424-18039495,
18039609-18039670,18039861-18039962,18040378-18040490,
18040809-18040940,18041156-18041243,18041617-18041711,
18041793-18042023,18042567-18042680,18042765-18042866,
18043091-18043207,18043301-18044146
Length = 810
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 436 AAEANVAKKDEPXPKRPNTLRAGTNTVTKL--VEKKK 540
AA A K++P PK+P TL A ++T + VEK+K
Sbjct: 93 AAGAKPEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEK 129
>03_06_0715 + 35693002-35694585
Length = 527
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = +1
Query: 319 PPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPXPKRPNTLR 498
PP+ F Q +K ++ +RPE V +E +++ A + P +PN L
Sbjct: 103 PPMAGFAQQAEKEKPGMADTVMNGFRPEAVPVYRELVRQFAVCDRWFASNPASTQPNRLF 162
Query: 499 AGTNTVTKLVEKKKAQLV 552
+ T LV LV
Sbjct: 163 VHSATSHGLVSNDTKLLV 180
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 299 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 424
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 222 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 329
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>05_05_0095 -
22347552-22347696,22347988-22348094,22348114-22348236,
22348325-22348458,22348766-22348874
Length = 205
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 406 EAVRKERLKKAAEANVAKKDEPXPKRPNTLRAGTNTVTKLVEKKKAQ 546
E R E LKK E A K+E KR A V ++ KK +
Sbjct: 153 EKARLEELKKQRELAAATKEEEKKKREEAKAAAAARVQAKLDAKKGK 199
>03_05_0223 -
22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 274 IQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKK 435
+ + LQ R + P PI Q ++ KGL Y P+ E + +++KK
Sbjct: 814 VHASRQPLQMRKQKPEPIRQLNPKFEENYIKGL-----DYDPDRERAQMKKMKK 862
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,637
Number of Sequences: 37544
Number of extensions: 305245
Number of successful extensions: 951
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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