Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L18
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 201 3e-52
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 167 4e-42
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 143 1e-34
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 107 8e-24
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 33 0.20
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 32 0.27
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 30 1.1
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 30 1.1
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 30 1.1
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 30 1.1
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 29 2.5
U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p... 29 3.3
AC024776-11|AAK68461.1| 349|Caenorhabditis elegans Hypothetical... 28 4.4
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr... 28 5.8
U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light ... 28 5.8
AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pomb... 28 5.8
AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pomb... 28 5.8
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 27 7.7
U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical pr... 27 7.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 201 bits (490), Expect = 3e-52
Identities = 94/161 (58%), Positives = 122/161 (75%), Gaps = 2/161 (1%)
Frame = +1
Query: 121 VAAAPLVVK--NVEPKKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAV 294
VAA P ++ K++ NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+
Sbjct: 11 VAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAI 70
Query: 295 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPX 474
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ +K RL+ AEA A K E
Sbjct: 71 LQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEV 130
Query: 475 PKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 597
KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL L
Sbjct: 131 TKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHL 171
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 167 bits (407), Expect = 4e-42
Identities = 86/161 (53%), Positives = 112/161 (69%), Gaps = 2/161 (1%)
Frame = +1
Query: 121 VAAAPLVVK--NVEPKKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAV 294
VAA P ++ K++ NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+
Sbjct: 11 VAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAI 70
Query: 295 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPX 474
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ V
Sbjct: 71 LQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEV-------------------- 110
Query: 475 PKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 597
KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL L
Sbjct: 111 TKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHL 151
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 143 bits (346), Expect = 1e-34
Identities = 67/118 (56%), Positives = 86/118 (72%), Gaps = 2/118 (1%)
Frame = +1
Query: 121 VAAAPLVVK--NVEPKKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAV 294
VAA P ++ K++ NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+
Sbjct: 114 VAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAI 173
Query: 295 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDE 468
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ +K RL+ AEA A K E
Sbjct: 174 LQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPESSEAKKNRLRARAEARAAGKKE 231
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 107 bits (256), Expect = 8e-24
Identities = 49/79 (62%), Positives = 61/79 (77%), Gaps = 2/79 (2%)
Frame = +1
Query: 121 VAAAPLVVK--NVEPKKIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAV 294
VAA P ++ K++ NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+
Sbjct: 114 VAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAI 173
Query: 295 LQRRLKVPPPINQFTQTLD 351
LQ+RLKVPP INQF LD
Sbjct: 174 LQKRLKVPPTINQFRTALD 192
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 32.7 bits (71), Expect = 0.20
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Frame = +1
Query: 352 KTTAKGLFKILEKYRPETEAVRKE------RLKKAAEANVAKKDEPXPKRP----NTLRA 501
KT AK L + LEK P+ +A+R+E RL K E + K DE P+ + L A
Sbjct: 7816 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNK-LEKELTKVDEFKPEDALPIVDQLAA 7874
Query: 502 GTNTVTKLV----EKKKAQLVVIAHD 567
TNT+ EK A +I+HD
Sbjct: 7875 NTNTLKTATDSNNEKAVAPSSLISHD 7900
Score = 31.9 bits (69), Expect = 0.36
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Frame = +1
Query: 352 KTTAKGLFKILEKYRPETEAVRKERLK-----KAAEANVAKKDEPXPKRP----NTLRAG 504
KT AK L + LEK P+ +A+R+E+ + E + K DE P+ + L A
Sbjct: 3250 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEKELTKVDEFKPEDALPIVDQLAAN 3309
Query: 505 TNTVTKLV----EKKKAQLVVIAHD 567
TNT+ EK A +I+HD
Sbjct: 3310 TNTLKTATDSNNEKAVAPSSLISHD 3334
Score = 31.9 bits (69), Expect = 0.36
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Frame = +1
Query: 352 KTTAKGLFKILEKYRPETEAVRKERLK-----KAAEANVAKKDEPXPKRP----NTLRAG 504
KT AK L + LEK P+ +A+R+E+ + E + K DE P+ + L A
Sbjct: 4153 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEKELTKVDEFKPEDALPIVDQLAAN 4212
Query: 505 TNTVTKLV----EKKKAQLVVIAHD 567
TNT+ EK A +I+HD
Sbjct: 4213 TNTLKTATDSNNEKAVAPSSLISHD 4237
Score = 31.9 bits (69), Expect = 0.36
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Frame = +1
Query: 352 KTTAKGLFKILEKYRPETEAVRKERLK-----KAAEANVAKKDEPXPKRP----NTLRAG 504
KT AK L + LEK P+ +A+R+E+ + E + K DE P+ + L A
Sbjct: 5107 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEKELTKVDEFKPEDALPIVDQLAAN 5166
Query: 505 TNTVTKLV----EKKKAQLVVIAHD 567
TNT+ EK A +I+HD
Sbjct: 5167 TNTLKTATDSNNEKAVAPSSLISHD 5191
Score = 31.9 bits (69), Expect = 0.36
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Frame = +1
Query: 352 KTTAKGLFKILEKYRPETEAVRKERLK-----KAAEANVAKKDEPXPKRP----NTLRAG 504
KT AK L + LEK P+ +A+R+E+ + E + K DE P+ + L A
Sbjct: 6010 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEKELTKVDEFKPEDALPIVDQLAAN 6069
Query: 505 TNTVTKLV----EKKKAQLVVIAHD 567
TNT+ EK A +I+HD
Sbjct: 6070 TNTLKTATDSNNEKAVAPSSLISHD 6094
Score = 31.9 bits (69), Expect = 0.36
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Frame = +1
Query: 352 KTTAKGLFKILEKYRPETEAVRKERLK-----KAAEANVAKKDEPXPKRP----NTLRAG 504
KT AK L + LEK P+ +A+R+E+ + E + K DE P+ + L A
Sbjct: 6913 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEKELTKVDEFKPEDALPIVDQLAAN 6972
Query: 505 TNTVTKLV----EKKKAQLVVIAHD 567
TNT+ EK A +I+HD
Sbjct: 6973 TNTLKTATDSNNEKAVAPSSLISHD 6997
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 32.3 bits (70), Expect = 0.27
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +1
Query: 493 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 597
L+ G N TK + + ++++V+A D +P+E++L L
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHL 69
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 213 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 383
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 64 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 213 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 383
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 101 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 213 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 383
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 101 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 213 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 383
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 101 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 379 ILEKYRPETEA-----VRKERLKKAAEANVAKKDEPXPKRPNTLRAGTNTVT 519
+L++ R E EA ++ E+ KK AE V+KK++ K P +L TVT
Sbjct: 184 VLDEDRKEVEALVEAKIQDEKAKKKAE-KVSKKEKEVEKPPVSLEEAVKTVT 234
>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
protein T08A9.1 protein.
Length = 1330
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +1
Query: 394 RPETEAVRKERLKKAAEANVAKKDEPXPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 573
R E E K+R++ +A KKDE ++ TL ++ E K +L + + +
Sbjct: 878 RAELEKEFKQRIEVITKAVECKKDEAFARQEKTLEIENRVLSSENESKSKKLEAMNREKE 937
Query: 574 PIELVL 591
+E ++
Sbjct: 938 QLESLI 943
>AC024776-11|AAK68461.1| 349|Caenorhabditis elegans Hypothetical
protein Y41D4B.11 protein.
Length = 349
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +1
Query: 376 KILEKYRPETEAVR-KERLKKAAEANVAKKDE-PXPK-RPNTLRAGTNTVTKLVEKKKAQ 546
K ++ + + A R K++ K + +A V+ KDE P K N + +G T ++ +KKK +
Sbjct: 16 KSVDPFNNKANAARFKDKNKNSNQAPVSLKDEQPLTKAAKNLMGSGITTKEEVKKKKKQK 75
Query: 547 LVVIA 561
V+A
Sbjct: 76 NAVLA 80
>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
C38D4.3 protein.
Length = 1784
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +1
Query: 316 PPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPXPKRPNTL 495
PP N + + KT A +LE P A R+ R VA+ DE T
Sbjct: 1443 PPSRNTRSASAQKTVAANK-SVLESEIPSRSASRRTRSTSLRNDTVAEPDETSVAM--TT 1499
Query: 496 RAGTNTVTKLVEKKKAQ 546
R T +++V K+ ++
Sbjct: 1500 RRRTRATSEVVSKQSSE 1516
>U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light
chain protein 1 protein.
Length = 226
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +1
Query: 361 AKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPXPKRPNTLRAGTNTVTKLVEKKK 540
+KG IL P EA + K E ++KKDE K+ LRA + K++
Sbjct: 103 SKGPSPILSTV-PRIEAEKIRLWKAQQEQLLSKKDEAEEKKKIELRANAKKELEEWYKQR 161
Query: 541 AQLVVIAHD 567
+ + ++HD
Sbjct: 162 EKTLQLSHD 170
>AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform b protein.
Length = 684
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 313 VPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPXPKRPNT 492
VP +F++ + ++G +LE+ R KE +KKAAEA + K E +R
Sbjct: 508 VPISPKKFSEMQKEQKSQGAMSLLERIRA------KEAIKKAAEACIDKDLERRKQRLTL 561
Query: 493 LR 498
LR
Sbjct: 562 LR 563
>AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform a protein.
Length = 741
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 313 VPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPXPKRPNT 492
VP +F++ + ++G +LE+ R KE +KKAAEA + K E +R
Sbjct: 508 VPISPKKFSEMQKEQKSQGAMSLLERIRA------KEAIKKAAEACIDKDLERRKQRLTL 561
Query: 493 LR 498
LR
Sbjct: 562 LR 563
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -2
Query: 233 LVGWMSWPIAKF--FVLFSNRGFTIF 162
LVGW +W I F +L SNR F +F
Sbjct: 97 LVGWFAWCIGPFSQVLLTSNRIFAVF 122
>U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical
protein W05H9.1 protein.
Length = 414
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 385 EKYRPETEAVRKERLKKAAEANVAKKDEPXPKRPNTLRAGTNTVTKLVEKKK 540
+KYR ET+ E L K ++A + DE ++ A +EK K
Sbjct: 55 DKYREETQKKLNETLSKVSDAVKQRADELEKEKQEKAEAKKKEAEAAIEKWK 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,825,438
Number of Sequences: 27780
Number of extensions: 251001
Number of successful extensions: 773
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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