Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L17
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    29   0.25 
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       29   0.25 
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    28   0.75 
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   1.7  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   3.0  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   4.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   4.0  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   7.0  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      24   9.3  

>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 261 TDFKTKIRFLIDTGSDLCVYPLKFVINKRLQRTNYELFAANGSV 392
           TDF  K+ FL   G +L +   K +  K  +   YELF++  S+
Sbjct: 124 TDFPLKLFFLSTVGIELLIVNEKIIPQKTQKYLLYELFSSPSSI 167


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 226 LADITDCPARFPCSYKVNG 170
           L D+T+ P RF  +YKVNG
Sbjct: 501 LLDVTELPVRFKLTYKVNG 519


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 0.75
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 32  K*LHYLHARGGGHVDVSPVCIVLEHHRKK 118
           K L + H+RG  H DV P  ++++H ++K
Sbjct: 146 KALDFCHSRGIMHRDVKPHNVMIDHKKRK 174


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 178 PCSYKGNAPGSR*CRPKTTASLVAACLLQTLKLKFDF 288
           P  YKGNA G   C P TT   V   + Q++ L  +F
Sbjct: 875 PKVYKGNALGHTICAPFTTLKDVLKEVPQSVGLNVEF 911


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 38   LHYLHARGGGHVDVSPVCIVLEHH 109
            L Y+H+ G  H DV P  I+ +H+
Sbjct: 1232 LAYIHSCGVSHQDVKPENILFDHN 1255


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 74  DVSPVCIVLEHHRKKGVNFVGTTGSFVIKLSSAVHLVATRETRRAVGNVGQK 229
           DV P+  +  H RK G+     T + V+  SSA + +   +  + V +V  K
Sbjct: 123 DVHPIAELKGHSRKVGLVQYHPTAANVLASSSADNTIKLWDCEKGVAHVSLK 174


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 38  LHYLHARGGGHVDVSPVCIVLEHHR 112
           L Y+H+RG  H D+ P  I L+ +R
Sbjct: 760 LAYIHSRGMMHRDLKPGNIFLDENR 784


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 32  K*LHYLHARGGGHVDVSPVCIVLEHHRKKGVNFVGTTGSFVIKLSS 169
           K L YLH+RG  H D+    I++++  K  ++  G +    +  +S
Sbjct: 508 KGLEYLHSRGIVHRDIKGANILVDNKGKIKISDFGISKKLELNSTS 553


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 319 YTHKSEPVSIKNRILVLKSVINKRPLE 239
           Y   SEP  + N +L+  S++++RPL+
Sbjct: 100 YIEFSEPSLVPNALLLNGSMLHERPLK 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,964
Number of Sequences: 5004
Number of extensions: 35636
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)