Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L17
(446 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390 29 1.3
03_05_0416 - 24031024-24032367 29 2.3
03_05_0269 - 22545925-22546554,22546663-22547010,22547447-22547797 29 2.3
03_06_0061 + 31352703-31353037,31353145-31353274,31353708-313539... 28 3.0
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410 27 6.9
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 27 6.9
12_02_1026 - 25478462-25479232,25479249-25479821 27 9.1
07_01_0105 - 798883-798942,799118-799186,799282-799345,799434-79... 27 9.1
04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890... 27 9.1
03_02_0094 - 5583932-5584036,5584137-5584200,5584305-5584387,558... 27 9.1
>05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390
Length = 397
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 213 VMSAKNDCL-SSGRLFITDFKTKIRFLIDTGSDLCVYPLKFVINKRLQRTNYELFAANGS 389
++ KN L + R + ++KT F ++ S C + ++K L++T+YEL +
Sbjct: 123 IVERKNRTLIEAARAMLDEYKTSDVFWVEAVSTACHAINRLYLHKILKKTSYELLSGKKP 182
Query: 390 VISTY 404
+S +
Sbjct: 183 NVSYF 187
>03_05_0416 - 24031024-24032367
Length = 447
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 38 LHYLHARGGGHVDVSPVCIVLEHHRKKGVNFVG 136
L Y HARG H DV P ++L+ H V+ G
Sbjct: 135 LIYCHARGVSHRDVKPQNVLLDAHGNLKVSDFG 167
>03_05_0269 - 22545925-22546554,22546663-22547010,22547447-22547797
Length = 442
Score = 28.7 bits (61), Expect = 2.3
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +3
Query: 123 SILLVPLEVS*SSYQVPFTL*LQGKRAGQSVMSAKNDCLSSG--RLFITDFKTKIRFLID 296
SI P+E S + Y + L G GQ ++++ + + G R+ T+F+T R + +
Sbjct: 111 SIKDTPIETSSAQYILQQYLAASG---GQKLLASVRNAYTMGKVRMVATEFETAGRLVKN 167
Query: 297 TGSDLCVYPLKFVINKRLQRTNYELFAANGSVI 395
+ C P +FV+ + Y A GS +
Sbjct: 168 RNAARCAEPGRFVLWQMAPEMWYIELAVGGSKV 200
>03_06_0061 +
31352703-31353037,31353145-31353274,31353708-31353902,
31354696-31354725,31355238-31355395,31355756-31355846,
31355924-31355989,31356331-31356413,31356495-31356558,
31356641-31356709,31356798-31356833
Length = 418
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 38 LHYLHARGGGHVDVSPVCIVLEHHRKK 118
L Y H+RG H DV P I+++H +++
Sbjct: 232 LDYCHSRGIMHRDVKPHNIMIDHEKRQ 258
>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
Length = 1279
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 44 YLHARGGGHVDVSPVCIVL 100
+LHA+GG HV V+ +CIVL
Sbjct: 276 HLHAQGG-HVFVASICIVL 293
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 38 LHYLHARGGGHVDVSPVCIVLEHHRKKGVNFVGTT 142
+ YLHARG H D+ P ++L+ + V +GT+
Sbjct: 157 MEYLHARGVVHRDLKPENLMLDGGGRVKVADLGTS 191
>12_02_1026 - 25478462-25479232,25479249-25479821
Length = 447
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 38 LHYLHARGGGHVDVSPVCIVLE 103
L Y HARG H DV P ++L+
Sbjct: 137 LSYCHARGVAHRDVKPQNVLLD 158
>07_01_0105 -
798883-798942,799118-799186,799282-799345,799434-799516,
799957-800022,800143-800233,800622-800779,801144-801338,
801499-801628,803016-803168,803877-803962
Length = 384
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 32 K*LHYLHARGGGHVDVSPVCIVLEHHRKK 118
K L Y H++G H DV P ++++H +K
Sbjct: 188 KALDYCHSQGIMHRDVKPHNVMIDHELRK 216
>04_04_0308 +
24286923-24286927,24288430-24288907,24288980-24289099,
24289182-24289235,24289467-24289579,24289799-24290011,
24290123-24290201,24290323-24290376,24290448-24290522,
24291029-24291193,24291843-24291941,24292186-24292241,
24292331-24292433,24293289-24293417,24293657-24293835,
24293953-24293977,24294060-24294175,24294252-24294342
Length = 717
Score = 26.6 bits (56), Expect = 9.1
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = -2
Query: 319 YTHKSEPVSIKNRILVLKSVINKRPLERQSFLADI 215
Y HK+ P + ++ ++++SV+N+ ++ ++ DI
Sbjct: 482 YFHKTSPQLLADKDILIRSVLNRSEMKDGHYVFDI 516
>03_02_0094 -
5583932-5584036,5584137-5584200,5584305-5584387,
5584523-5584588,5584711-5584801,5585259-5585392,
5586219-5586413,5586886-5587015,5587873-5587958
Length = 317
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 32 K*LHYLHARGGGHVDVSPVCIVLEHHRKK 118
K L Y H++G H DV P ++++H +K
Sbjct: 137 KALDYCHSQGIMHRDVKPHNVMIDHELRK 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,648,053
Number of Sequences: 37544
Number of extensions: 222048
Number of successful extensions: 478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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