Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L17
         (446 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM231061-1|CAJ76912.1| 1960|Homo sapiens obscurin isoform B prot...    31   2.4  
AL670729-4|CAH71670.2| 2582|Homo sapiens obscurin, cytoskeletal ...    31   2.4  
AL353593-4|CAM27610.1| 2582|Homo sapiens obscurin, cytoskeletal ...    31   2.4  
AB046859-1|BAB13465.2| 2584|Homo sapiens KIAA1639 protein protein.     31   2.4  
BC050604-1|AAH50604.1|  560|Homo sapiens radial spoke head 3 hom...    30   4.1  
AK057931-1|BAB71615.1|  560|Homo sapiens protein ( Homo sapiens ...    30   4.1  
M55268-1|AAA51548.1|  350|Homo sapiens casein kinase II alpha' s...    29   5.5  
BC008812-1|AAH08812.1|  350|Homo sapiens casein kinase 2, alpha ...    29   5.5  

>AM231061-1|CAJ76912.1| 1960|Homo sapiens obscurin isoform B
           protein.
          Length = 1960

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 38  LHYLHARGGGHVDVSPVCIVLEHHRKKGV 124
           LHYLH+ G  H+D+ P  I++ H  ++ +
Sbjct: 567 LHYLHSHGVLHLDIKPSNILMVHPAREDI 595


>AL670729-4|CAH71670.2| 2582|Homo sapiens obscurin, cytoskeletal
            calmodulin and titin-interacting RhoGEF protein.
          Length = 2582

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 38   LHYLHARGGGHVDVSPVCIVLEHHRKKGV 124
            LHYLH+ G  H+D+ P  I++ H  ++ +
Sbjct: 1191 LHYLHSHGVLHLDIKPSNILMVHPAREDI 1219


>AL353593-4|CAM27610.1| 2582|Homo sapiens obscurin, cytoskeletal
            calmodulin and titin-interacting RhoGEF protein.
          Length = 2582

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 38   LHYLHARGGGHVDVSPVCIVLEHHRKKGV 124
            LHYLH+ G  H+D+ P  I++ H  ++ +
Sbjct: 1191 LHYLHSHGVLHLDIKPSNILMVHPAREDI 1219


>AB046859-1|BAB13465.2| 2584|Homo sapiens KIAA1639 protein protein.
          Length = 2584

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 38   LHYLHARGGGHVDVSPVCIVLEHHRKKGV 124
            LHYLH+ G  H+D+ P  I++ H  ++ +
Sbjct: 1191 LHYLHSHGVLHLDIKPSNILMVHPAREDI 1219


>BC050604-1|AAH50604.1|  560|Homo sapiens radial spoke head 3
           homolog (Chlamydomonas) protein.
          Length = 560

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 41  HYLHARGGGHVDVSPVCIVLEHHRKKG 121
           HYLH   G H  ++P C   + HRK+G
Sbjct: 112 HYLHL-SGSHNTLAPTCFKAKLHRKRG 137


>AK057931-1|BAB71615.1|  560|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25202 fis, clone REC05350. ).
          Length = 560

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 41  HYLHARGGGHVDVSPVCIVLEHHRKKG 121
           HYLH   G H  ++P C   + HRK+G
Sbjct: 112 HYLHL-SGSHNTLAPTCFKAKLHRKRG 137


>M55268-1|AAA51548.1|  350|Homo sapiens casein kinase II alpha'
           subunit protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 32  K*LHYLHARGGGHVDVSPVCIVLEHHRKK 118
           K L Y H++G  H DV P  ++++H +KK
Sbjct: 143 KALDYCHSKGIMHRDVKPHNVMIDHQQKK 171


>BC008812-1|AAH08812.1|  350|Homo sapiens casein kinase 2, alpha
           prime polypeptide protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 32  K*LHYLHARGGGHVDVSPVCIVLEHHRKK 118
           K L Y H++G  H DV P  ++++H +KK
Sbjct: 143 KALDYCHSKGIMHRDVKPHNVMIDHQQKK 171


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,213,647
Number of Sequences: 237096
Number of extensions: 1180290
Number of successful extensions: 1986
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1986
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)