Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L17
(446 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82263-4|CAB62794.1| 316|Caenorhabditis elegans Hypothetical pr... 29 1.5
AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein. 29 1.5
AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated... 29 1.5
AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated... 29 1.5
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 29 1.5
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 1.5
AC024798-6|AAK29913.1| 356|Caenorhabditis elegans Hypothetical ... 28 2.7
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z82051-10|CAB04822.2| 577|Caenorhabditis elegans Hypothetical p... 27 4.7
AL033508-4|CAE45091.1| 430|Caenorhabditis elegans Hypothetical ... 27 4.7
AL021175-11|CAA15973.2| 577|Caenorhabditis elegans Hypothetical... 27 4.7
AF077546-4|AAC26317.2| 704|Caenorhabditis elegans Hypothetical ... 27 4.7
AC024135-1|AAY86224.1| 300|Caenorhabditis elegans Hypothetical ... 27 4.7
CU457744-3|CAM36369.1| 247|Caenorhabditis elegans Hypothetical ... 27 8.2
>Z82263-4|CAB62794.1| 316|Caenorhabditis elegans Hypothetical
protein C47A4.3 protein.
Length = 316
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 252 LFITDFKTKIRFLIDTGSDLCVYPLKFVINKRLQRTNYELFAANGSVISTYGW 410
LF+ D+ + RF I+T L Y +KF N L R N+E N TYG+
Sbjct: 85 LFLGDYVDRGRFSIETIVLLLAYKVKFPCNFFLLRGNHECEFVN----KTYGF 133
>AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.
Length = 1338
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 38 LHYLHARGGGHVDVSPVCIVLEHHRKKGVNFV 133
LH+LH +G H+DV+P I+ + R V V
Sbjct: 1237 LHFLHFKGIAHLDVNPHNIMFQSKRSWVVKLV 1268
>AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated
protein 89, isoform c protein.
Length = 1393
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 38 LHYLHARGGGHVDVSPVCIVLEHHRKKGVNFV 133
LH+LH +G H+DV+P I+ + R V V
Sbjct: 1201 LHFLHFKGIAHLDVNPHNIMFQSKRSWVVKLV 1232
>AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated
protein 89, isoform d protein.
Length = 1396
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 38 LHYLHARGGGHVDVSPVCIVLEHHRKKGVNFV 133
LH+LH +G H+DV+P I+ + R V V
Sbjct: 1204 LHFLHFKGIAHLDVNPHNIMFQSKRSWVVKLV 1235
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 38 LHYLHARGGGHVDVSPVCIVLEHHRKKGVNFV 133
LH+LH +G H+DV+P I+ + R V V
Sbjct: 7249 LHFLHFKGIAHLDVNPHNIMFQSKRSWVVKLV 7280
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 38 LHYLHARGGGHVDVSPVCIVLEHHRKKGVNFV 133
LH+LH +G H+DV+P I+ + R V V
Sbjct: 7889 LHFLHFKGIAHLDVNPHNIMFQSKRSWVVKLV 7920
>AC024798-6|AAK29913.1| 356|Caenorhabditis elegans Hypothetical
protein Y48G9A.11 protein.
Length = 356
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -2
Query: 268 KSVINKRPLERQSFLADITDCPARFPCSYKVNGT**LDHETSSGTNKIDAFLSMMFENY 92
K+V ++ + FL ITDC AR C Y+ +H + N+ A+ +M F N+
Sbjct: 119 KTVKSEISTRQPGFLCPITDCTAR--CDYQATLN---EHVRAQHENEQVAYETMQFANF 172
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 119 LSFDDVRELCKLGLRPRDLR 60
L FDDV E C+LGLR D +
Sbjct: 138 LLFDDVLESCRLGLRKPDTK 157
>Z82051-10|CAB04822.2| 577|Caenorhabditis elegans Hypothetical
protein T23D5.2 protein.
Length = 577
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 168 LDSLITKLPVVPTKLTPFFR*CSRTMQTG 82
L +L+ LP +P TPFF S T QTG
Sbjct: 261 LPTLLFHLPALPVLFTPFFN-VSFTFQTG 288
>AL033508-4|CAE45091.1| 430|Caenorhabditis elegans Hypothetical
protein Y106G6G.6 protein.
Length = 430
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 319 YTHKSEPVSIKNRILVLKSVINKRPLERQSFL 224
+ H + PVS+ +RI + S ++ RPL Q F+
Sbjct: 81 HIHLTAPVSLLSRISDIISTLSHRPLVHQMFI 112
>AL021175-11|CAA15973.2| 577|Caenorhabditis elegans Hypothetical
protein T23D5.2 protein.
Length = 577
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 168 LDSLITKLPVVPTKLTPFFR*CSRTMQTG 82
L +L+ LP +P TPFF S T QTG
Sbjct: 261 LPTLLFHLPALPVLFTPFFN-VSFTFQTG 288
>AF077546-4|AAC26317.2| 704|Caenorhabditis elegans Hypothetical
protein T08E11.4 protein.
Length = 704
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 435 VQSPMTK*SNRKYL*LSHWLQKVHNLFAEGVY 340
+ SP T+ N+K L+H +Q V N+ G+Y
Sbjct: 534 LDSPCTETMNQKTFMLNHTVQNVSNIKERGIY 565
>AC024135-1|AAY86224.1| 300|Caenorhabditis elegans Hypothetical
protein C25A6.1 protein.
Length = 300
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 252 LFITDFKTKIRFLIDTGSDLCVYPLKFVINKRLQRTNYE 368
LF+ D+ + RF I+T L Y +KF N L R N+E
Sbjct: 85 LFLGDYVDRGRFSIETIVLLLAYKVKFPGNLFLLRGNHE 123
>CU457744-3|CAM36369.1| 247|Caenorhabditis elegans Hypothetical
protein T06A10.4 protein.
Length = 247
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 79 KPSLHSSRTSSKERRQFCWYHWKFRDQAIKCRSP-CSY 189
KP + +++ + +CW D I+C +P C Y
Sbjct: 161 KPESEKAVAAAEPPKMYCWCQLDKNDTMIECENPGCKY 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,095,668
Number of Sequences: 27780
Number of extensions: 198301
Number of successful extensions: 425
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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