Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L16
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    45   6e-06
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   3.8  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   5.0  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    25   8.8  

>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = +2

Query: 200 DVGAGHALGDFLLQLENYNPSIPDSVVAYYLNMSGFESQDP 322
           D+     L +FL Q+++Y+P IPD ++ YYL++SGF+  DP
Sbjct: 86  DMAKDKTLENFLAQMDDYSPLIPDVLLDYYLSLSGFKCVDP 126


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 302 LTYLNNMPPRNQEWMDYSFLIAGGNRRARVPHLRPLPCPRMVN 174
           ++Y+N++  +  +W+D   LI    RR+ V     +P   + N
Sbjct: 407 ISYINSLLNQGMDWLDIEKLIQSQKRRSPVAAAIQIPLKLIKN 449


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +2

Query: 233 LLQLENYNPSIPDSVVAYYLNMSGFESQDPT*RIQVFKHSIWEI 364
           +L +++ N     S+V  + ++S     +   R++VF+  IW +
Sbjct: 116 VLLVKSNNKKFDTSIVLKHTHLSSKSQNEKKARVKVFRQEIWAL 159


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 182 SVGMEEDVGAGHALGDFLLQLENYNPSIPD----SVVAYYLNMSGFESQD 319
           SV + ED+G   A+G  +L   +  P + +    ++V+  L  S FES++
Sbjct: 134 SVSVTEDLGDSSAIGRTILVNNSVEPQMENTANITIVSPSLKESDFESEE 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,623
Number of Sequences: 5004
Number of extensions: 39683
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)