Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L16
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0216 - 15727044-15727124,15728557-15728607,15728695-157287...    37   0.011
12_02_0058 + 13015401-13016654                                         27   8.8  
06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615...    27   8.8  

>09_04_0216 -
           15727044-15727124,15728557-15728607,15728695-15728752,
           15729336-15729398,15729740-15729804,15729901-15730038
          Length = 151

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 221 LGDFLLQLENYNPSIPDSVVAYYLNMSGFESQD 319
           L +FL  L +Y P+IPD +V +YL  SGF   D
Sbjct: 33  LTEFLSSLMDYTPTIPDELVEHYLGRSGFYCPD 65


>12_02_0058 + 13015401-13016654
          Length = 417

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 227 DFLLQLE-NYNPSIPDSVVAYYL 292
           DFLL+L   +NPS P+ VV YYL
Sbjct: 7   DFLLELGFRFNPS-PEQVVTYYL 28


>06_02_0369 -
           15260013-15260273,15260367-15260516,15261518-15261577,
           15262114-15262241,15262559-15262654,15262655-15263039
          Length = 359

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 126 QIFQMQKFLHQLLDLIIYNIHINNCSYLTLCLQSSLHIFTL 4
           Q+ +  K++H  ++      H   C+ + +CL S +  FTL
Sbjct: 118 QMLRALKYIHTGINFTFLKSHFLACASVVVCLYSYITTFTL 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,274,134
Number of Sequences: 37544
Number of extensions: 232124
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)