Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L16
         (514 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071220-1|AAL48842.1|  146|Drosophila melanogaster RE26329p pro...    50   2e-06
AJ243837-1|CAB55761.1|  146|Drosophila melanogaster TATA binding...    50   2e-06
AJ237968-1|CAB40838.1|  146|Drosophila melanogaster TATA-binding...    50   2e-06
AE014134-465|AAF51211.1|  146|Drosophila melanogaster CG3069-PA ...    50   2e-06
AY118419-1|AAM48448.1|  167|Drosophila melanogaster RE73934p pro...    35   0.056
AJ276419-1|CAC08819.1|  167|Drosophila melanogaster TBP associat...    35   0.056
AJ243836-1|CAB55760.2|  167|Drosophila melanogaster TATA binding...    35   0.056
AE014134-466|AAF51210.1|  167|Drosophila melanogaster CG2859-PA ...    35   0.056

>AY071220-1|AAL48842.1|  146|Drosophila melanogaster RE26329p
           protein.
          Length = 146

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +2

Query: 221 LGDFLLQLENYNPSIPDSVVAYYLNMSGFESQD 319
           L DF+ QLE+Y P IPD+V ++YLNM GF+S D
Sbjct: 41  LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDD 73


>AJ243837-1|CAB55761.1|  146|Drosophila melanogaster TATA binding
           protein asssociatedfactor 16kDa subunit, (dTAFII16
           protein) protein.
          Length = 146

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +2

Query: 221 LGDFLLQLENYNPSIPDSVVAYYLNMSGFESQD 319
           L DF+ QLE+Y P IPD+V ++YLNM GF+S D
Sbjct: 41  LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDD 73


>AJ237968-1|CAB40838.1|  146|Drosophila melanogaster TATA-binding
           protein associatedfactor TAFII16 protein.
          Length = 146

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +2

Query: 221 LGDFLLQLENYNPSIPDSVVAYYLNMSGFESQD 319
           L DF+ QLE+Y P IPD+V ++YLNM GF+S D
Sbjct: 41  LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDD 73


>AE014134-465|AAF51211.1|  146|Drosophila melanogaster CG3069-PA
           protein.
          Length = 146

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +2

Query: 221 LGDFLLQLENYNPSIPDSVVAYYLNMSGFESQD 319
           L DF+ QLE+Y P IPD+V ++YLNM GF+S D
Sbjct: 41  LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDD 73


>AY118419-1|AAM48448.1|  167|Drosophila melanogaster RE73934p
           protein.
          Length = 167

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +2

Query: 221 LGDFLLQLENYNPSIPDSVVAYYLNMSGFESQDP 322
           + + + QLE+Y+P+IPD++  + L  +GF + DP
Sbjct: 57  MDELIKQLEDYSPTIPDALTMHILKTAGFCTVDP 90


>AJ276419-1|CAC08819.1|  167|Drosophila melanogaster TBP associated
           factor TAFII24 protein.
          Length = 167

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +2

Query: 221 LGDFLLQLENYNPSIPDSVVAYYLNMSGFESQDP 322
           + + + QLE+Y+P+IPD++  + L  +GF + DP
Sbjct: 57  MDELIKQLEDYSPTIPDALTMHILKTAGFCTVDP 90


>AJ243836-1|CAB55760.2|  167|Drosophila melanogaster TATA binding
           protein asssociatedfactor 24kDa subunit, (dTAFII24
           protein) protein.
          Length = 167

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +2

Query: 221 LGDFLLQLENYNPSIPDSVVAYYLNMSGFESQDP 322
           + + + QLE+Y+P+IPD++  + L  +GF + DP
Sbjct: 57  MDELIKQLEDYSPTIPDALTMHILKTAGFCTVDP 90


>AE014134-466|AAF51210.1|  167|Drosophila melanogaster CG2859-PA
           protein.
          Length = 167

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +2

Query: 221 LGDFLLQLENYNPSIPDSVVAYYLNMSGFESQDP 322
           + + + QLE+Y+P+IPD++  + L  +GF + DP
Sbjct: 57  MDELIKQLEDYSPTIPDALTMHILKTAGFCTVDP 90


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,946,978
Number of Sequences: 53049
Number of extensions: 406864
Number of successful extensions: 900
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1867000320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)