Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L16
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55370-5|AAA97996.1|  176|Caenorhabditis elegans Taf (tbp-associ...    37   0.007
U55370-4|AAK82906.1|  179|Caenorhabditis elegans Taf (tbp-associ...    37   0.007
U40421-5|AAA81441.1|  133|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81533-9|CAB04341.1|  307|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>U55370-5|AAA97996.1|  176|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 10,
           isoform a protein.
          Length = 176

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 227 DFLLQLENYNPSIPDSVVAYYLNMSGFESQDP 322
           +F+ QL +Y P+IPDSV  ++L  +G +  DP
Sbjct: 78  EFINQLADYPPTIPDSVTLHFLKSAGVDGSDP 109


>U55370-4|AAK82906.1|  179|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 10,
           isoform b protein.
          Length = 179

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 227 DFLLQLENYNPSIPDSVVAYYLNMSGFESQDP 322
           +F+ QL +Y P+IPDSV  ++L  +G +  DP
Sbjct: 81  EFINQLADYPPTIPDSVTLHFLKSAGVDGSDP 112


>U40421-5|AAA81441.1|  133|Caenorhabditis elegans Hypothetical
           protein C02B8.3 protein.
          Length = 133

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 197 EDVGAGHALGDFLLQLENYNPSIPDSVVAYYLNMSGFESQDPT*RIQVFKHSI 355
           +D+  GH + D + QL +Y PS P     +++N    +S D T  + +F + +
Sbjct: 24  DDLSKGHTMSDPVYQLCSYMPS-PKDYNKFHVNGVQMDSDDYTTILTMFANQL 75


>Z81533-9|CAB04341.1|  307|Caenorhabditis elegans Hypothetical
           protein F36G9.14 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 191 MEEDVGAGHALGDFLLQLENYNPSIPDSVVAYYLN 295
           +E ++  G AL D  + L+N N ++ D  + +Y+N
Sbjct: 81  IEGELHTGMALNDLKIILQNPNLNLQDFTITFYVN 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,919,233
Number of Sequences: 27780
Number of extensions: 212276
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)