Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L14
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    68   9e-13
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    68   9e-13
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    30   0.30 
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.8  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   6.4  

>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 68.1 bits (159), Expect = 9e-13
 Identities = 31/51 (60%), Positives = 38/51 (74%)
 Frame = +3

Query: 447 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIR 599
           K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  T++EIR
Sbjct: 63  KHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIR 113


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 68.1 bits (159), Expect = 9e-13
 Identities = 31/51 (60%), Positives = 37/51 (72%)
 Frame = +3

Query: 447 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIR 599
           K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  T++EIR
Sbjct: 63  KHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIR 113


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
 Frame = +1

Query: 280 IVANQKVKIPESL--TVHVKSVGDVKGPPI----LNKLQTL 384
           IV N  V+ P++L  T HV+  G + GPP+    LN L+TL
Sbjct: 332 IVGNTTVQRPKTLKSTSHVEETGGLSGPPLKPIALNTLRTL 372


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 429 ISPLSMGGLTMDVTAKC-LKFV*NRRTFHVTNGFHMDG 319
           +SP+ + G   DVT KC LK   NR +    + ++++G
Sbjct: 352 LSPIHLRGALRDVTNKCNLKVPRNRNSLSNLDEYYVNG 389


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 470 SMLSCRKHDQRCDQGIPIQDACSVRSFPYQLCHH--*GKHNY 589
           S L+CR+   +CD G P  + C  RS   Q C +   GK NY
Sbjct: 22  SCLACRRKKLKCDHGRPCSN-CLKRS-TIQSCIYIDPGKTNY 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,228
Number of Sequences: 5004
Number of extensions: 49825
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)