Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L14
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044     81   7e-16
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...    81   7e-16
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029...    31   0.53 

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 37/62 (59%), Positives = 46/62 (74%)
 Frame = +3

Query: 414 LKVEKWFRFLNKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIE 593
           L+V+ WF    + +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  NT IE
Sbjct: 54  LQVDAWFG-TRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIE 112

Query: 594 IR 599
           IR
Sbjct: 113 IR 114


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 37/62 (59%), Positives = 46/62 (74%)
 Frame = +3

Query: 414 LKVEKWFRFLNKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIE 593
           L+V+ WF    + +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  NT IE
Sbjct: 47  LQVDAWFG-TRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIE 105

Query: 594 IR 599
           IR
Sbjct: 106 IR 107


>11_05_0033 +
           18500092-18501372,18502419-18502826,18502948-18502990,
           18503236-18503282,18504582-18505901
          Length = 1032

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -1

Query: 224 VDNYFTVSFI--KTNMHYFNYIKL*FITIL*YIIDNNVIFNRFIWIY*RKINSSCRILQP 51
           +  Y+   F   K+   YF ++ +  + +L +++ N    N  IWI    + S  + +  
Sbjct: 434 ISGYYAARFFTKKSLSSYFTFVAIASMMVLWFVVHNYWDLN--IWIAGMPLKSFTKYVVA 491

Query: 50  GIIFRARHPGLALFP 6
            +I     PGLAL P
Sbjct: 492 AVIMAMTVPGLALLP 506



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 152  ITIL*YIIDNNVIFNRFIWIY*RKINSSCRILQP 51
            + +L   + N+++FNRF+W Y R+ ++   +  P
Sbjct: 956  VALLMMTLPNHILFNRFMWDYVRQTDAKLLLTLP 989


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,491,609
Number of Sequences: 37544
Number of extensions: 302705
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)