Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L14
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...    95   5e-20
AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p...    30   1.5  
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p4...    27   7.7  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 42/62 (67%), Positives = 51/62 (82%)
 Frame = +3

Query: 414 LKVEKWFRFLNKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIE 593
           L+V KWF  + KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +E
Sbjct: 53  LRVRKWFG-VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVE 111

Query: 594 IR 599
           IR
Sbjct: 112 IR 113


>AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p450
           family protein 33C9 protein.
          Length = 496

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = -1

Query: 428 FLHFQWED*PWMSQPS----V*SLFRIGGPFTSPTDFT-WTVRLSGIFTFWFATICFIL 267
           F H  W+   W + P+    + +L  +  P      F  WT +   I+TFW  T  +IL
Sbjct: 15  FHHLYWKRRNWPAGPTPLPLIGNLLSLRNPAPGYKAFARWTAKYGDIYTFWLGTRPYIL 73


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 461 C*DSMLSCRKHDQRCDQGIPIQDACSVRSFPYQLCH 568
           C DSM++C     +CDQG  +Q  C    +   +CH
Sbjct: 21  CEDSMITCPDLKDQCDQGF-VQSQC---PYTCGICH 52


>AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p450
           family protein 33C5 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 326 WTVRLSGIFTFWFATICFIL 267
           WT +  G++TFW   I +++
Sbjct: 54  WTKQFGGVYTFWMGNIPYVI 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,759,564
Number of Sequences: 27780
Number of extensions: 286326
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)