Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L14
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.2  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +2

Query: 434 PVLKQ-RTSCC*DSMLSCRKHDQRCDQGIPIQDACSV---RSFPYQLCHH*GKHNY 589
           P ++Q  TS C    L C     +C  GI +  AC +      P +LC   G  NY
Sbjct: 26  PSIRQGTTSYC----LGCGDSCHKCKYGIAMSSACGIVQCAKGPDELCG--GPQNY 75


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 492 MIKGVTKGFQYKMRAVYAH 548
           M++G+  G QY     Y H
Sbjct: 740 MLRGIASGMQYLAEMNYVH 758


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 465 RTVCSHVENMIKGV 506
           R VC  +EN I+G+
Sbjct: 477 RAVCGRIENTIQGL 490


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 360 DSKQTSNTWL*HPW 401
           D   T+N WL H W
Sbjct: 64  DQILTTNVWLEHEW 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,808
Number of Sequences: 438
Number of extensions: 3515
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)