Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L13
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    31   0.44 
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   4.1  
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    27   7.2  

>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 494 LFLKFLDNFKIGVRGCSYIRVYTLFEFYFILFI 396
           L L FL    IGV  C YI ++ +F  Y+ LFI
Sbjct: 108 LILMFLPITHIGVPVCIYIALHIVFALYYFLFI 140


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 387 TQLNIIKLITA*TYIFMIMLQFIYFIFSLYY*SSHNTLSTMNETHSI 247
           T  N+I L+ A   I ++++ F+ F+F     S +   ST+++T +I
Sbjct: 38  TSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSYNYMSSTLDQTLTI 84


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 352 LCSYKFNNVELCKCLINKIK*NSNKVYTRI*EQPLTPILKLSKNFK 489
           LC Y   N+++   ++     +S   + +I +Q LTP +K S N K
Sbjct: 641 LCRYILRNLKVKGVIMKTYHLSSEAFHKKISQQDLTPFVKYSLNKK 686


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,927,793
Number of Sequences: 27780
Number of extensions: 221821
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)