Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L12
         (201 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   0.26 
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    25   1.4  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   1.8  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   3.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        23   4.2  
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    23   5.5  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    22   9.7  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    22   9.7  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    22   9.7  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 0.26
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 199 RIRLCFIAQLLKRSEQGDYLRVGRSSVLQRALRMPDYQTLTK 74
           R+R+ ++A  LK + Q  Y+R  + +V    ++ P Y  LTK
Sbjct: 266 RLRISYLALFLKNTLQFGYIR-KKENVNLNLVKTPKYDDLTK 306


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +2

Query: 23  PVTHRVLRGSQLPVSVLFRQCLIIWHAEGPLENRAPPDAEVVTLLAALQKLCD 181
           P T +    S  PVS     C  + H  GPL      DAE +  + A+ +  D
Sbjct: 337 PGTTKFSNASGPPVSANCEHCGYVHHVGGPLWGGPLHDAEFLKKMRAIAEDLD 389


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 38  VLRGSQLPVSVLF-RQCLIIWHAEGPLENRAPPDAEVVTLLAALQKLCD 181
           +LR +   +S++  R   ++  + G +E+ AP     +T L  LQK CD
Sbjct: 58  LLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCD 106


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 200 TDSSLFYRTASEAQRAG*LPPRREELGSPEGPPH 99
           T++S+    A+ A  +G LPP  E+  +PEG P+
Sbjct: 273 TEASVLTSNATTAG-SGELPPGWEQRYTPEGRPY 305


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 112  RALRMPDYQTLTKEHRDW*LASSQHP 35
            R L +P+ Q L K H ++ L ++Q+P
Sbjct: 989  RELFIPETQVLVKPHPEFMLFATQNP 1014


>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 143 PPRREELGSPEGPPHARLSNID 78
           PPR+ ++  P+  P   LSN D
Sbjct: 26  PPRKPKIVQPKKKPSKHLSNED 47


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 50  SQLPVSVLFRQCLIIWHAEGPLENRAPPDA 139
           S  P+    +Q   I +   P+  RAPPDA
Sbjct: 195 STFPIDGFEQQFFDITYCYFPITFRAPPDA 224


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 64  DW*LASSQHPVCYRSDHS 11
           DW  A+ +HP  Y++ H+
Sbjct: 181 DWFAATPKHPFLYQAIHN 198


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 11  RVIAPVTHRVLRGSQLPVSVLFRQCLIIWHAEGPLEN 121
           +V  P++  + R + +   +LFR  L++ H E  LEN
Sbjct: 571 KVPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLEN 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 798,744
Number of Sequences: 5004
Number of extensions: 12077
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)