Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L12
(201 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 0.52
07_03_1102 - 23981362-23982219 28 1.2
12_02_0663 + 21653536-21653541,21654027-21654212,21654316-216543... 27 2.1
03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434... 27 2.1
03_01_0448 - 3444608-3444814,3446419-3446497,3446567-3446691,344... 27 2.1
01_07_0172 + 41704905-41706170 27 2.1
11_01_0805 - 7166265-7166759 27 2.8
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 27 2.8
11_03_0127 - 10408628-10409106,10409188-10409821 26 3.6
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 26 3.6
02_05_0205 + 26755024-26756217 26 3.6
12_02_0213 - 15745459-15745908,15745981-15746559 26 4.8
10_08_0061 + 14547655-14548245 26 4.8
09_02_0125 + 4554786-4556012 26 4.8
04_01_0472 - 6144655-6145182,6145204-6145881,6149337-6149765,614... 26 4.8
12_01_0256 + 1895081-1895575,1896367-1896513,1897435-1897524 25 6.4
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 25 6.4
08_02_0731 - 20483518-20484154,20484182-20484375,20484541-204846... 25 6.4
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 25 6.4
02_03_0276 - 17209623-17209654,17209806-17210244 25 6.4
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 25 8.4
07_03_0514 + 18984375-18985865 25 8.4
05_02_0017 - 5617052-5617492 25 8.4
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.1 bits (62), Expect = 0.52
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +1
Query: 22 SGNTPGAERKPATSLGALSSMFDNLA 99
S N P A ++P+T G++SS+F++++
Sbjct: 466 SANNPFAPKQPSTGFGSISSVFNSIS 491
>07_03_1102 - 23981362-23982219
Length = 285
Score = 27.9 bits (59), Expect = 1.2
Identities = 25/60 (41%), Positives = 28/60 (46%)
Frame = -2
Query: 194 SSLFYRTASEAQRAG*LPPRREELGSPEGPPHARLSNIDERAPRLVAGFLSAPGVLPERS 15
SSLFY S + + PPRR GS PP A I RL G + AP V P RS
Sbjct: 138 SSLFYAHPSPSPQLRTRPPRRST-GSAPPPPPATAWGIF----RL--GVVGAPDVYPPRS 190
>12_02_0663 +
21653536-21653541,21654027-21654212,21654316-21654393,
21654581-21654694,21654799-21654865,21654954-21655015,
21655123-21655262,21655552-21655678,21655758-21655872,
21656111-21656199,21656593-21656733,21657067-21657192,
21657655-21657714,21658285-21658443
Length = 489
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 56 LPVSVLFRQCLIIWHAEGPLENRAPPDAEVVTL 154
+P +++ +W LE RAPP +E+ L
Sbjct: 300 VPETLVLNMSTFVWSVVTGLEGRAPPTSEIYAL 332
>03_06_0411 +
33741903-33742163,33742990-33743168,33743342-33743426,
33743506-33743822,33743983-33744106,33744810-33744902,
33745296-33745364,33745654-33745704,33745705-33745854,
33745904-33746125,33746413-33746568,33746716-33746823,
33746992-33747126,33747209-33747364,33747544-33747664,
33748182-33748267
Length = 770
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -2
Query: 176 TASEAQRAG*LPPRREELGSPEGPPHARLSNIDERAPRLVAGFLSAP 36
TA A LPPRR +P + S R RL A SAP
Sbjct: 6 TALSASLPRLLPPRRRRFPTPSSSSPSAASTSTSRVVRLRAAAASAP 52
>03_01_0448 -
3444608-3444814,3446419-3446497,3446567-3446691,
3446765-3446809,3447070-3447165,3447344-3447417,
3447526-3447649,3447975-3448109,3448206-3448535,
3448610-3448762,3448840-3449391,3449569-3449648,
3450395-3450506,3450579-3450749,3450820-3450879
Length = 780
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +2
Query: 38 VLRGSQLPVSVLFRQCLIIWHAEGPLENRAPP 133
+++ LP+++ QC++ AEGP+ ++ PP
Sbjct: 181 LIQDKSLPITLWDVQCILDIPAEGPVISKLPP 212
>01_07_0172 + 41704905-41706170
Length = 421
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 116 PEGPPHARLSNIDE 75
PEGPPH RL+++ E
Sbjct: 163 PEGPPHLRLTSVHE 176
>11_01_0805 - 7166265-7166759
Length = 164
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Frame = -2
Query: 140 PRREELGSPEGP-----PHA-RLSNIDERAPRLVAGFLSAP 36
PRR LG P PH +L I PRL+AGF S P
Sbjct: 44 PRRGRLGVHNPPAFKPTPHRPKLPTIRPEHPRLLAGFASPP 84
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -2
Query: 146 LPPRREELGSPEGPPHARLSNIDERAPRLVAGFLSAPGVLPERSLAPR 3
LPP + L + +R + E A RL A +L A GV+PE L R
Sbjct: 70 LPPPPDALLTAAADRRSRADVLLE-AGRLAARYLVAQGVIPEHRLRAR 116
>11_03_0127 - 10408628-10409106,10409188-10409821
Length = 370
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 5 EGRVIAPVTHRVLRGSQLPVSVLFR--QCLIIWHAEGPLENRAPPDAE 142
EG VI HR++R + P ++R QC +W A + R P +++
Sbjct: 7 EGYVIE--LHRLMRHLRYPRFPIYRVRQCGSVWEARVEVHTRVPSESD 52
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 119 SPEGPPHARLSNIDERAPRLVAGFLSAP 36
+P PPH S D P + A + SAP
Sbjct: 23 APNPPPHPASSAADAAPPTIPASYASAP 50
>02_05_0205 + 26755024-26756217
Length = 397
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 5 EGRVIAPVTHRVLRGSQLPVSVLFR--QCLIIWHAEGPLENRAPPDAE 142
EG VI HR++R + P ++R QC +W A + R P +++
Sbjct: 7 EGYVIE--LHRLMRRLRYPRFPIYRVRQCGSVWEARVEVHTRVPSESD 52
>12_02_0213 - 15745459-15745908,15745981-15746559
Length = 342
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 5 EGRVIAPVTHRVLRGSQLP--VSVLFRQCLIIWHAEGPLENRAPPDAE 142
EG VI HR+LR + P S RQC +W A + R P + +
Sbjct: 18 EGYVIE--LHRMLRRLRYPGFPSYRVRQCGSVWEARVEIHPRVPSELD 63
>10_08_0061 + 14547655-14548245
Length = 196
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 5 EGRVIAPVTHRVLRGSQLP--VSVLFRQCLIIWHAEGPLENRAPPDAE 142
EG VI HR+LR + P S RQC +W A + R P + +
Sbjct: 18 EGYVIE--LHRMLRRLRYPGFPSYRVRQCGSVWEARVEIHPRVPSELD 63
>09_02_0125 + 4554786-4556012
Length = 408
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 5 EGRVIAPVTHRVLRGSQLP--VSVLFRQCLIIWHAEGPLENRAPPDAE 142
EG VI HR+LR + P S RQC +W A + R P + +
Sbjct: 18 EGYVIE--LHRMLRRLRYPGFPSYRVRQCGSVWEARVEIHPRVPSELD 63
>04_01_0472 -
6144655-6145182,6145204-6145881,6149337-6149765,
6149930-6150123,6150222-6150261
Length = 622
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 5 EGRVIAPVTHRVLRGSQLP--VSVLFRQCLIIWHAEGPLENRAPPDAE 142
EG VI HR+LR + P S RQC +W A + R P + +
Sbjct: 239 EGYVIE--LHRMLRRLRYPGFPSYRVRQCGSVWEARVEIHPRVPSELD 284
>12_01_0256 + 1895081-1895575,1896367-1896513,1897435-1897524
Length = 243
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 143 PPRREELGSPEGPPHARLSNIDERA-PRLVAGFLSAPGVLPE 21
P RR + + PPH R +++ E P ++ + G+ PE
Sbjct: 41 PQRRRAAAAADPPPHIRNASVVENTEPDVLFAYTPHDGLSPE 82
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +2
Query: 8 GRVIAPVTHRVLRGSQLPVSVLFRQCLIIWHAEGP-LENRAPPDAE 142
G++ P+ R G+ V QC W+A P L+ P AE
Sbjct: 146 GQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLVPYSAE 191
>08_02_0731 -
20483518-20484154,20484182-20484375,20484541-20484640,
20485282-20485622
Length = 423
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 143 PPRREELGSPEGPPHAR-LSNIDERAPRLVAGFLSAPGVLPERSLAP 6
PPRR SP PP R + P+LVAG +S P S+ P
Sbjct: 283 PPRRSS--SPVPPPSPRRILRRARPTPKLVAGAVSVTMQDPPPSMRP 327
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 107 PPHARLSNIDERAPRLVAGFLSAPGVLPERSLAPR 3
PP + A RL A +L A GVLP SL R
Sbjct: 56 PPPQDKHEVLMEAGRLAAEYLVAKGVLPPASLQRR 90
>02_03_0276 - 17209623-17209654,17209806-17210244
Length = 156
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 5 EGRVIAPVTHRVLRGSQLPVSVLFR--QCLIIWHAEGPLENRAPPDAE 142
EG VI HR++R + P ++R QC +W A + R P + +
Sbjct: 7 EGYVIE--LHRLIRRLRYPRFPIYRVRQCGSVWEARVEVHTRVPSELD 52
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +2
Query: 8 GRVIAPVTHRVLRGSQLPVSVLFRQCLIIWHAEGP-LENRAPPDAE 142
G++ P+ R G+ V QC W+A P L+ P AE
Sbjct: 126 GQINVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLTPYSAE 171
>07_03_0514 + 18984375-18985865
Length = 496
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 143 PPRREE-LGSPEGPPHARLSNIDERAPRLVAGFL 45
PP E G+P+G H +N+DE P GFL
Sbjct: 318 PPAAESGTGAPDGSEHPTDANLDELLPE---GFL 348
>05_02_0017 - 5617052-5617492
Length = 146
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 82 LTKEHRDW*LASSQHPVCYR 23
L KE DW LA P+C R
Sbjct: 4 LPKEEVDWILAQCNEPICAR 23
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,823,955
Number of Sequences: 37544
Number of extensions: 98983
Number of successful extensions: 350
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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