Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L12
         (201 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK090993-1|BAC03564.1|  667|Homo sapiens protein ( Homo sapiens ...    30   1.6  
BC111555-1|AAI11556.1|  421|Homo sapiens PRRT3 protein protein.        29   2.1  
BC089447-1|AAH89447.1|  981|Homo sapiens proline-rich transmembr...    29   2.1  
AY358158-1|AAQ88525.1|  421|Homo sapiens ASSP5823 protein.             29   2.1  
AJ544583-1|CAD67566.1|  293|Homo sapiens testis serine protease ...    29   3.6  

>AK090993-1|BAC03564.1|  667|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33674 fis, clone BRAWH2002047. ).
          Length = 667

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 143 PPRREELGSPEGPPHARLSNIDERAPRLVAGFLSAPGVLPERSLAP 6
           PP  E    P  P  A ++  D  +P+ V G + APG    +SL P
Sbjct: 326 PPASEAPDGPSKPERAAMNGADPISPQRVRGAVEAPGT--PKSLIP 369


>BC111555-1|AAI11556.1|  421|Homo sapiens PRRT3 protein protein.
          Length = 421

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 143 PPRREELGSPEGPPHARLSNIDERAPRLVAGFLSAPGVLPERSLAP 6
           PP  E    P  P  A ++  D  +P+ V G + APG    +SL P
Sbjct: 326 PPASEAPDRPSKPERAAMNGADPISPQRVRGAVEAPGT--PKSLIP 369


>BC089447-1|AAH89447.1|  981|Homo sapiens proline-rich transmembrane
           protein 3 protein.
          Length = 981

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 143 PPRREELGSPEGPPHARLSNIDERAPRLVAGFLSAPGVLPERSLAP 6
           PP  E    P  P  A ++  D  +P+ V G + APG    +SL P
Sbjct: 326 PPASEAPDRPSKPERAAMNGADPISPQRVRGAVEAPGT--PKSLIP 369


>AY358158-1|AAQ88525.1|  421|Homo sapiens ASSP5823 protein.
          Length = 421

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 143 PPRREELGSPEGPPHARLSNIDERAPRLVAGFLSAPGVLPERSLAP 6
           PP  E    P  P  A ++  D  +P+ V G + APG    +SL P
Sbjct: 326 PPASEAPDRPSKPERAAMNGADPISPQRVRGAVEAPGT--PKSLIP 369


>AJ544583-1|CAD67566.1|  293|Homo sapiens testis serine protease 2
           precursor protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 118 LQRALRMPDYQTLTKEHRDW*LASSQHPVCYRSDHSPL 5
           +QRA   P + T+T    D  L   QHPV + S+  P+
Sbjct: 148 VQRAFVHPKFSTVTTIRNDLALLQLQHPVNFTSNIQPI 185


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,538,701
Number of Sequences: 237096
Number of extensions: 534700
Number of successful extensions: 1696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 76,859,062
effective HSP length: 45
effective length of database: 66,189,742
effective search space used: 1389984582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)