Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L12
         (201 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50070-7|CAA90396.1|   87|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    26   4.2  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    25   5.6  
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting...    25   5.6  
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U00055-2|AAA50721.1|  223|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>Z50070-7|CAA90396.1|   87|Caenorhabditis elegans Hypothetical
           protein F43G6.7 protein.
          Length = 87

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 146 LPPRREELGSPEGPPHARLSNIDERAPRLVAGFLSAPGVLPER 18
           LPP  ++ G    PP A    + E+ P  VA  ++AP    E+
Sbjct: 41  LPPPHQQPGQAPDPPAAAQDEL-EQEPEAVAAPVAAPAAEEEQ 82


>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 120 FSRGPSACQIIKH*RKSTETGSWLPLSTRCVTGAITRP 7
           F  G     + K   K+ +TG  +   TR + G ITRP
Sbjct: 54  FYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRP 91


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
            protein protein8, isoform b protein.
          Length = 1780

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 131  EELGSPEGPPHARLSNIDERAPRLVAGFLSAPGVLPERSLAP 6
            E + S +G PH  +      + R+ +G   +P +   RS+AP
Sbjct: 1302 ESITSMQGAPHRHIQLAGPSSSRIQSGRGVSPALSASRSVAP 1343


>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
            protein protein8, isoform c protein.
          Length = 1697

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 131  EELGSPEGPPHARLSNIDERAPRLVAGFLSAPGVLPERSLAP 6
            E + S +G PH  +      + R+ +G   +P +   RS+AP
Sbjct: 1219 ESITSMQGAPHRHIQLAGPSSSRIQSGRGVSPALSASRSVAP 1260


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 143 PPRREELGSPEGPPHARLSNIDERAPRLVAGFLSAPGV 30
           P +R  LG P GPP   +  I    P   +     PG+
Sbjct: 341 PQQRSLLGEPSGPPMGEMQPIVHGIPSAQSVNFPPPGL 378


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 143 PPRREELGSPEGPPHARLSNIDERAPRLVAGFLSAPGV 30
           P +R  LG P GPP   +  I    P   +     PG+
Sbjct: 341 PQQRSLLGEPSGPPMGEMQPIVHGIPSAQSVNFPPPGL 378


>U00055-2|AAA50721.1|  223|Caenorhabditis elegans Hypothetical
           protein R02F2.5 protein.
          Length = 223

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 140 PRREELGSPEGPPHARLSNIDERAPRLV 57
           PR++  G P+GPP A       +AP  V
Sbjct: 41  PRQQPQGIPQGPPPAYAPPAAPKAPEKV 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,607,380
Number of Sequences: 27780
Number of extensions: 76390
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)