Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L11
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   184   8e-48
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    41   2e-04
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.1  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   6.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   6.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  184 bits (449), Expect = 8e-48
 Identities = 91/176 (51%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 360 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXD-EPPPKRPNTLRAGTNTVTKLVEK 536
           TA  +FK+L KYRPET                     +   K+P  ++ G N V  L+E 
Sbjct: 86  TATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEA 145

Query: 537 KKAQLVVIAHDVDPIELVLFLATLWRKMGVPDWIVKGKSRMGALVHRKTCTSVALT 704
           KKA+LV+IA DVDPIELV+FL  L +KMGVP  IVK K+R+G ++H+KT   +A+T
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVT 201


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = +3

Query: 495 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLATLWRKMGVPDWIVKGKSRMG 662
           LR G N  TK + +  ++ +V+A D +PIE++L L  L     VP   V  K+ +G
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 288 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 389
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +2

Query: 56  ESLELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 208
           E  ELKS+ +G       D   S   S C +E  +     KPS   + K+ C
Sbjct: 212 EHAELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 4/117 (3%)
 Frame = -2

Query: 670 TSAPIRDLPFTIQSGTPILRQSVARKSTSSIGSTS*AMT----TSCAFFFSTSLVTVLVP 503
           TS P+    +TI S TP+    V   +T+   STS   T    TS     +    +  VP
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTPVT--TTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVP 562

Query: 502 ARRVXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSGLYFSKILNRPLAVVLSNVWVNW 332
                                          S S LY S  +  P +   S+  V+W
Sbjct: 563 YTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSW 619


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 301 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 399
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,376
Number of Sequences: 5004
Number of extensions: 49855
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)