Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L11
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   185   3e-47
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...   159   2e-39
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   154   6e-38
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151...    40   0.002
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744...    39   0.004
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438...    32   0.51 
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645...    29   2.7  
01_01_0437 - 3293624-3294029,3294094-3294212                           29   3.6  
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497     28   8.4  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  185 bits (451), Expect = 3e-47
 Identities = 93/175 (53%), Positives = 118/175 (67%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK 
Sbjct: 24  LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83

Query: 360 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 539
            A  LFK+L KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 84  LATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 142

Query: 540 KAQLVVIAHDVDPIELVLFLATLWRKMGVPDWIVKGKSRMGALVHRKTCTSVALT 704
           KAQLVVIAHDVDPIELV++L  L RKM VP  IVKGK+R+G++VH+KT + + LT
Sbjct: 143 KAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLT 197


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score =  159 bits (386), Expect = 2e-39
 Identities = 85/175 (48%), Positives = 114/175 (65%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
           LFEKR K F IG  + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK 
Sbjct: 25  LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84

Query: 360 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 539
                 ++L++ + E                         K+P  ++ G + VT L+E+ 
Sbjct: 85  LGCQKERLLKRAQAEAEGKTVEA-----------------KKPIVVKYGLDHVTYLIEQS 127

Query: 540 KAQLVVIAHDVDPIELVLFLATLWRKMGVPDWIVKGKSRMGALVHRKTCTSVALT 704
           KAQLVVIAHDVDPIELV++L  L RKM +P  IVKGK+R+G++VH+KT + + LT
Sbjct: 128 KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLT 182


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  154 bits (374), Expect = 6e-38
 Identities = 78/149 (52%), Positives = 97/149 (65%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK 
Sbjct: 8   LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67

Query: 360 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 539
            A  LFK+L KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 68  LATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 126

Query: 540 KAQLVVIAHDVDPIELVLFLATLWRKMGV 626
           KAQLVVIAHDVDPIELV++L  L RKM +
Sbjct: 127 KAQLVVIAHDVDPIELVVWLPALCRKMEI 155


>10_01_0125 +
           1509642-1509759,1509847-1509950,1510693-1510824,
           1510936-1510962
          Length = 126

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +3

Query: 495 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLATLWRKMGVPDWIVKGKSRMG 662
           L+ G N  TK + +  A+ VV+A D +P+E++L L  L     VP   V  K  +G
Sbjct: 33  LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 88


>03_02_0321 +
           7443835-7443837,7443957-7444077,7444168-7444271,
           7445056-7445187,7445285-7445311
          Length = 128

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +3

Query: 495 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLATLWRKMGVPDWIVKGKSRMG 662
           L+ G N  TK + +  ++ VV+A D +P+E++L L  L     VP   V  K  +G
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90


>02_05_0610 -
           30342105-30342266,30343024-30343129,30343788-30343857,
           30343978-30344092
          Length = 150

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 495 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLATLWRKMGVPDWIVKGKSRM--GAL 668
           L+ G   V K + +    L VIA ++ PI+++  +  L  +  +P   V  K  +     
Sbjct: 45  LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104

Query: 669 VHRKTCTSVALT 704
             R TC  + +T
Sbjct: 105 TKRPTCCVLVMT 116


>11_03_0212 -
           11761856-11762037,11762302-11762398,11763571-11764545,
           11766172-11766263,11766450-11766510
          Length = 468

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +3

Query: 201 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 368
           N  +GQD +    ++ +V+   Y  I Q+ + +L  RLK  PP    + TQ + K    K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411

Query: 369 GLFKILEK 392
               +L+K
Sbjct: 412 AAKDVLQK 419


>01_01_0437 - 3293624-3294029,3294094-3294212
          Length = 174

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 471 PPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 575
           PPP +    R GT+++  +    KA++ VI HD +
Sbjct: 34  PPPPQQQAARKGTHSLEGVKPLPKAEVSVICHDAN 68


>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
          Length = 369

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 301 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 426
           +++   +R S++      K QP  C+RSW   G+  +Q G++
Sbjct: 74  TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,567,378
Number of Sequences: 37544
Number of extensions: 357340
Number of successful extensions: 1034
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)