Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L10
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    27   8.3  
04_03_0943 + 20963362-20964399                                         27   8.3  
04_01_0286 + 3800617-3801720,3801945-3801989,3802063-3802203,380...    27   8.3  

>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
            31678677-31678715
          Length = 1885

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 495  RFSLNTVYFQNRSRSHRLI*KLRRNVCLRSYRMRECPHALRSAVTPQ 355
            RF  +   +  R+ +   I  LR+ VCL+S  +  CP    S V P+
Sbjct: 1170 RFLTSLAIYGCRNLATISIESLRQLVCLKSLELYGCPKLFSSDVPPE 1216


>04_03_0943 + 20963362-20964399
          Length = 345

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 391 MSSRSPECGHSSAIALSCTRHNH 323
           M S SP  GH+  I ++C R NH
Sbjct: 322 MGSISPLTGHNGEIRMNCRRVNH 344


>04_01_0286 +
           3800617-3801720,3801945-3801989,3802063-3802203,
           3802368-3802397,3802519-3803025
          Length = 608

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 326 PYYLQLISKDLVRSSHHCECALVQPPA 246
           PY  Q IS + V S+H C   L  PPA
Sbjct: 349 PYDAQSISMETVASAHECMQFLSLPPA 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,014,260
Number of Sequences: 37544
Number of extensions: 230393
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)