Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L10
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    34   0.049
Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U04712-2|AAA81902.1|  565|Caenorhabditis elegans unc-87 protein.       27   7.5  
AF106590-6|AAT68897.1|  544|Caenorhabditis elegans Uncoordinated...    27   7.5  
AF106590-5|AAC78234.1|  565|Caenorhabditis elegans Uncoordinated...    27   7.5  

>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
           protein T20G5.5 protein.
          Length = 1234

 Score = 34.3 bits (75), Expect = 0.049
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -2

Query: 299 DLVRSSHHCECALVQPPAAPLFTIARSHFITIYN 198
           DL   +H C C + +P  A L  IA++HF+++YN
Sbjct: 281 DLSTLTHSCSCLVTRP--AQLIRIAQNHFLSVYN 312


>Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical
           protein C09H10.7 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 435 FISIYDYDFYFGNIPYLVRN 494
           FIS+ DY FY   IP+ +RN
Sbjct: 112 FISLPDYHFYHYEIPFKLRN 131


>U04712-2|AAA81902.1|  565|Caenorhabditis elegans unc-87 protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 361 SDRTPESV-RTFPHSIRSQTDIPSQFSYQSMTTTSILEIYR 480
           S R  E++ R  P++   + +IP QF+ ++ TT S LE Y+
Sbjct: 49  SPRQSEALERLRPNTASRERNIPIQFTGKNPTTNSALEEYK 89


>AF106590-6|AAT68897.1|  544|Caenorhabditis elegans Uncoordinated
           protein 87, isoform c protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 361 SDRTPESV-RTFPHSIRSQTDIPSQFSYQSMTTTSILEIYR 480
           S R  E++ R  P++   + +IP QF+ ++ TT S LE Y+
Sbjct: 28  SPRQSEALERLRPNTASRERNIPIQFTGKNPTTNSALEEYK 68


>AF106590-5|AAC78234.1|  565|Caenorhabditis elegans Uncoordinated
           protein 87, isoform a protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 361 SDRTPESV-RTFPHSIRSQTDIPSQFSYQSMTTTSILEIYR 480
           S R  E++ R  P++   + +IP QF+ ++ TT S LE Y+
Sbjct: 49  SPRQSEALERLRPNTASRERNIPIQFTGKNPTTNSALEEYK 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,727,370
Number of Sequences: 27780
Number of extensions: 208506
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)