Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L08
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    29   0.46 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.5  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   3.2  
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    26   4.3  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   4.3  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    25   7.5  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   9.9  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   9.9  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    25   9.9  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 451 NTISSPGLGSSRSLMSKIINHLVNKAFADKGLSNAAGAGKRTMVIRLPS 305
           +T++   LG+S      + NHL +    D GL ++ G       +R P+
Sbjct: 442 STLNPSSLGASNLSQPSLANHLSSSGLFDNGLFSSGGLSSNFSSLRRPA 490


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 521 EIFPIRSFEMISQMRRLKITDIYKHYFFTRTWVFAK 414
           E+  +R+FE +SQ+RR+ +  I KH  F +   + K
Sbjct: 748 ELGIVRTFEFVSQLRRMAV--IVKHGKFKKMDAYVK 781


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 372 KALLTRWLMILDIRLREDPSPGEEIVFIDVSDLQPSHLRNHFKGSYW 512
           K  L RW + L I+     +   E +F++ S L P +    FKG  W
Sbjct: 420 KETLVRWRVRLYIQSFIRKATSYEALFLESSPLNPYYKDYKFKGFGW 466


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 351 MLQELVNALWSYVCHQHFEPEAELCTRL 268
           + Q+LVN +W   C  ++EP  E+  RL
Sbjct: 90  LAQDLVN-VWKAACEDNYEPIREIHERL 116


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 426 PSPGEEIVFIDVSDLQPSHLRNHFKGSYWKD 518
           PSP  E+ F D SD+ P++        +W D
Sbjct: 296 PSPPVEMNFPDTSDITPAYSEPEPIQDFWSD 326


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 150 LRHRLQGTVQECSARPV 100
           +RHRL+  ++ C+ARPV
Sbjct: 66  VRHRLEYHLKRCNARPV 82


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 84  LIREPTPDELSILELFPVTCDGDE 155
           L+R P+P  LS  EL  ++ D DE
Sbjct: 324 LVRTPSPASLSSSELINISRDWDE 347


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 281  YVRVLTTGKYLFVIWIPFVPQLSETARATGF 189
            Y  + T G +L  +WI F+P  +  A A GF
Sbjct: 1114 YTVIATLGSFL--LWIVFMPIYAVAAPAIGF 1142


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 462 SDLQPSHLRNHFKGSYWKDFVWCIKTAYPL 551
           SD    + +  F+   W+D V C+KT   L
Sbjct: 308 SDKSSKNFKPPFQKKSWEDLVDCVKTVQQL 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,162
Number of Sequences: 5004
Number of extensions: 46370
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)