Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L08
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0264 - 2002884-2003051,2003313-2003453,2004211-2004613,200...    29   3.3  
02_02_0351 + 9257204-9261388                                           29   3.3  
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168...    28   4.4  
06_01_0292 + 2136637-2137050,2137162-2137671                           28   5.8  
02_05_0906 + 32662199-32662376,32662506-32662615,32662776-326628...    28   5.8  
03_02_0028 - 5118621-5119448                                           27   7.6  

>11_01_0264 -
           2002884-2003051,2003313-2003453,2004211-2004613,
           2004778-2004960,2005074-2005324,2006323-2006928
          Length = 583

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 320 HTSAINTSSPKRNYVRVLTTGKYLFVIWIPF 228
           HT   N    K+N+ + L+  K++  +WIP+
Sbjct: 272 HTFVSNADEVKKNHKKWLSENKHIKYLWIPY 302


>02_02_0351 + 9257204-9261388
          Length = 1394

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 430 LGSSRSLMSKIINHLVNKAF--ADKGL-SNAAGAGKRTMVIRL 311
           LG S+ ++ K INHLVN     A K L SN  G GK   + RL
Sbjct: 695 LGYSKCILPKDINHLVNLCLLNARKELCSNIPGIGKMKYLQRL 737


>01_05_0337 +
           21115388-21115961,21116471-21116597,21116683-21116884,
           21117460-21117546,21117622-21117681,21117800-21117886,
           21118451-21118522,21118675-21118730,21118812-21118897,
           21119427-21119517,21119593-21119750,21119827-21119918,
           21120110-21120190,21120282-21120479
          Length = 656

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 342 PAALDRPLSAKALLTRWLMILDIRLREDPSPGEEIVFID--VSDLQPSHLRN 491
           P  ++RP+  KAL      IL+  L++DP   E I  I   V  L+P  ++N
Sbjct: 181 PPEIERPVYVKALSKTAASILESILKKDPHEAEFIQSIQEVVHSLEPVLVKN 232


>06_01_0292 + 2136637-2137050,2137162-2137671
          Length = 307

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 466 SLTS-INTISSPGLGSSRSLMSKIINHLVNKAFADKGLSNAAGA 338
           SLTS   T SSPG GSS S  +  +N +V     D+  ++AA A
Sbjct: 16  SLTSSTTTTSSPGAGSS-SPWAAALNSIVGDVRRDQAAAHAAAA 58


>02_05_0906 +
           32662199-32662376,32662506-32662615,32662776-32662894,
           32662982-32663072
          Length = 165

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 12  KDVVRSGIRMSPAASFAERWARDNLIREPTPDELSILELFPVTCD 146
           K  +  G+  SP++  A +WA DNL++    D + ++ + P   D
Sbjct: 5   KRTIGLGMDYSPSSKAAAKWAVDNLVK--AGDRIILVHVLPKGAD 47


>03_02_0028 - 5118621-5119448
          Length = 275

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 236 SR*RRDTFQLSRRVHS-SASGSKC*WQTYDHSAFTSSCSIG 355
           SR RR   +L RR    S S     W T D  ++ +SC +G
Sbjct: 104 SRLRRSRRRLHRRADPVSGSSGDSGWFTSDEDSYANSCGVG 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,700,910
Number of Sequences: 37544
Number of extensions: 331923
Number of successful extensions: 994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)