Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L08
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AL021492-5|CAA16385.2|  157|Caenorhabditis elegans Hypothetical ...    28   5.2  

>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical protein
            T21C9.6 protein.
          Length = 1215

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -3

Query: 257  KYLFVIWIPFVPQLSETARATGFIISPGSL-----GSLYLISVTGYREQFKNAQLV 105
            KY  + W PF P +S      G ++S G++     G   LI+V+     FK   LV
Sbjct: 1143 KYTDICWSPFFPIISGIVTEIGGLLSHGAVVAREYGLPSLIAVSNATYHFKTGDLV 1198


>AL021492-5|CAA16385.2|  157|Caenorhabditis elegans Hypothetical
           protein Y45F10D.10 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 466 SLTSINTISSPGLGSSRSLMSKIINHLVNKAFADK 362
           ++  IN++   G   SRSL  KI+ HL N     K
Sbjct: 12  AVQEINSLIQNGTSCSRSLEEKIVEHLENSQLLGK 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,946,778
Number of Sequences: 27780
Number of extensions: 268771
Number of successful extensions: 702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)