Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L08
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.39 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.3  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 17/75 (22%), Positives = 27/75 (36%)
 Frame = +3

Query: 222  WHKRYPDDEEILSSCQDAYIVPLRARSVDGRRMTIVRLPAPAALDRPLSAKALLTRWLMI 401
            W   Y   + +       Y        V G  +++   P    LDRPLS  AL    + +
Sbjct: 934  WQSIYAQPQTVQDQIVSEYYQNKPISEVIGGAISLDGKPLGFPLDRPLSLGALSVPNIFV 993

Query: 402  LDIRLREDPSPGEEI 446
             D+ +     P  +I
Sbjct: 994  KDVLVFHQGQPTNDI 1008


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 290 SGSKC*WQTYDHSAFTSSCSI 352
           SGSKC W    +      CS+
Sbjct: 66  SGSKCTWTITSYHRINLKCSL 86


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 466 SLTSINTISSPGLGSSRSLMSKIIN 392
           S+TS+N+ SSP     R+ ++++ N
Sbjct: 407 SITSVNSTSSPKPFPRRATLAQLHN 431


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 50  SVVCRTMGPR-QSNPGAYTGRAE 115
           +V+CRT GPR  +   A T R+E
Sbjct: 711 NVMCRTSGPRGVAIVSASTARSE 733


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,954
Number of Sequences: 438
Number of extensions: 3514
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)