Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L06
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0476 + 23248222-23248495,23249558-23249790 33 0.082
04_04_1182 + 31531426-31531702,31533741-31533997,31534672-315348... 30 0.58
01_06_1727 + 39477107-39477395,39477493-39477722 30 0.76
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 29 1.0
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 29 1.3
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 28 2.3
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 28 3.1
11_03_0153 + 10834388-10834813,10835731-10836012,10836153-108363... 27 4.1
04_04_0281 + 24121267-24121537,24122567-24122799 27 4.1
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 27 5.4
06_03_1223 - 28526869-28527192,28527515-28527634,28527742-285278... 27 5.4
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 27 7.1
08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957... 27 7.1
01_04_0063 - 15574855-15575143,15575398-15575602,15575746-155759... 27 7.1
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300... 26 9.4
04_03_0165 - 12170813-12170831,12171324-12171625 26 9.4
>02_04_0476 + 23248222-23248495,23249558-23249790
Length = 168
Score = 33.1 bits (72), Expect = 0.082
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 253 AKHDITFAYDATVLELKAHLERICGVQQSAQKLIVKGMARDN 378
A HD++ A +T ELK L + G++ Q+L+ +G R++
Sbjct: 79 AWHDVSIAATSTFGELKVRLSMVTGLEPREQRLLFRGKERED 120
>04_04_1182 +
31531426-31531702,31533741-31533997,31534672-31534818,
31535974-31536111
Length = 272
Score = 30.3 bits (65), Expect = 0.58
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 217 PEQIEFTVIFNKAKHDITFAYDATVLELKAHLERICGVQQSAQKLIVKGMARDN 378
P +I+ V + A+H++ + A+ ELK L G+ + Q+L +G R N
Sbjct: 68 PPEIKVRVKYGAARHEVAVSSIASFGELKKLLAARTGLPAADQRLTYRGKERGN 121
>01_06_1727 + 39477107-39477395,39477493-39477722
Length = 172
Score = 29.9 bits (64), Expect = 0.76
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 259 HDITFAYDATVLELKAHLERICGVQQSAQKLIVKGMARDN 378
HD++ AT +LK L + G+ Q+L+ KG RD+
Sbjct: 86 HDVSIDSTATFGDLKVMLSLVTGLWPRDQRLLYKGKERDD 125
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 29.5 bits (63), Expect = 1.0
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 226 IEFTVIFNKAKHDITFAYDATVLELKAHLERICGVQQSAQKLIVKGMARDN 378
I V FN H+I A+ ELK L G+ QK++ K RD+
Sbjct: 48 IRVKVKFNGVYHEIYINSQASFGELKKQLSAPTGLHPEDQKIVYKDKERDS 98
>02_01_0135 +
967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 142 IFRCQQLFYLPFLLVPLDNVFGSQ 71
+F+ L YL F++VP +N+FGS+
Sbjct: 632 LFKPNHLRYLEFIVVPTNNMFGSR 655
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 160 RGLLCAIFRCQQLFYLPFLLVPLDNVFGSQFSAVSPFSDAVH 35
+GLL + RC + +L +P+ + FG+ SPF D VH
Sbjct: 90 QGLLEEV-RCNHI-HLERRAIPISSRFGTPAKVTSPFGDIVH 129
>11_01_0346 -
2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 27.9 bits (59), Expect = 3.1
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = -3
Query: 305 AFNSKTVAS*ANVMSCLALLNITVNSICSGISHTAESS-ADSEVQAALSAXSSMCDFSLS 129
AFNS + CL LLN+ + IS + +SS + S + A +
Sbjct: 65 AFNSPLQLAAVVFNGCLGLLNLGLGLWMLRISFSQDSSISQSHWWLVILAQGFNLILTSF 124
Query: 128 TVVLSTVFTGTIR*CIW-IAVFCCISFL*CCTL 33
T + T F G W + + C +F+ CC++
Sbjct: 125 TFSVRTRFLGATFVRFWSVGLTICAAFICCCSV 157
>11_03_0153 +
10834388-10834813,10835731-10836012,10836153-10836322,
10836431-10836528,10836770-10838133
Length = 779
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 241 IFNKAKHDITFAYDATVLELKAHLERICGV--QQSAQKLIVKG 363
I +K++H A +A + LKA L+ CGV QQ+A + +G
Sbjct: 304 ILHKSEHFTRTAEEAVAVALKAGLDINCGVYMQQNAASALQQG 346
>04_04_0281 + 24121267-24121537,24122567-24122799
Length = 167
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 259 HDITFAYDATVLELKAHLERICGVQQSAQKLIVKGMARDN 378
HD++ T ELK + + G++ Q+L+ +G R++
Sbjct: 80 HDVSIGATCTFGELKTVVSIVTGLEPREQRLLFRGKERED 119
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 247 NKAKHDITFAYDATVLELKAHLERICGVQQSAQKLIVKG-MARDNMTL 387
N +K + DATV K + C V + Q+LI KG + +D TL
Sbjct: 38 NGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTL 85
>06_03_1223 -
28526869-28527192,28527515-28527634,28527742-28527816,
28527905-28527964,28528271-28528370,28528664-28529148,
28529243-28529437,28529532-28529762,28529851-28529967,
28530247-28530330,28530755-28530893,28530939-28531090
Length = 693
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 33 ECTASEKGDTAENCDPNTLSNGTSKNGR*NNC*QRKIAHRRPRRE 167
EC + GD + +C + SNGT K R++ RR R E
Sbjct: 82 ECLGAGSGDASASCSGDDSSNGTGKRDG-----SRRVRMRRYRSE 121
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 284 AS*ANVMSCLALLNITVNSICSGISHTAESSADSEVQAALSA-XSSMCDFS 135
AS A VM L V S+CSG++ E A + A ++A +M +F+
Sbjct: 697 ASEARVMDGLDFFVAGVGSVCSGVATGMEGMAGRVLCAGMAAVTGAMAEFA 747
>08_02_0582 +
18993816-18993890,18994050-18994446,18995645-18995748,
18995863-18996004,18996118-18996237,18996341-18996465,
18996903-18997061,18997161-18997323,18997420-18997545,
18997628-18997711,18997761-18998173,18998199-18998273,
18998463-18998663,18998862-18998971,18999072-18999156,
18999365-18999493,18999596-18999701,18999825-18999913,
19000064-19000366
Length = 1001
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 288 SFGIKSSSRTNMWSTAIRAKAN 353
S G+ ++SR+N+W+ RAK N
Sbjct: 844 STGLDTTSRSNLWNVIKRAKKN 865
>01_04_0063 -
15574855-15575143,15575398-15575602,15575746-15575947,
15576038-15576613,15576623-15576786,15576826-15576928,
15577259-15577847,15578056-15578372
Length = 814
Score = 26.6 bits (56), Expect = 7.1
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -3
Query: 242 ITVNSICSGISHTAES--SADSEVQAALSAXSSMCDFSL 132
IT+ SGIS A S SAD EVQ S CD L
Sbjct: 332 ITMRGGTSGISKEAPSNDSADKEVQPEKSVPQEYCDTRL 370
>06_01_0421 -
3000486-3000595,3000909-3001148,3001659-3001722,
3001969-3002274,3002365-3002579,3003047-3003341,
3003487-3003651,3003745-3004341,3004855-3004941,
3005022-3005342,3006218-3008242
Length = 1474
Score = 26.2 bits (55), Expect = 9.4
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Frame = -3
Query: 305 AFNSKTVAS*ANVMSCLALLNITVNSICSGISHTAESSADSE----VQAALSAXSSMCDF 138
AFNS + CL LLN+ + GIS E+S V A + F
Sbjct: 65 AFNSLLQLAAVVFTGCLGLLNLGLGLWMVGISFNQETSIYRPHWWLVILAQGFSLILTSF 124
Query: 137 SLSTVVLSTVFTGTIR*CIW-IAVFCCISFL*CCTLHSFVG 18
S S + F G W + + C +F+ CC++ VG
Sbjct: 125 SFS---IRPRFLGATFVRFWSLLLTICAAFICCCSVVYMVG 162
>04_03_0165 - 12170813-12170831,12171324-12171625
Length = 106
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 30 MECTASEKGDTAENCDP 80
+EC SEKG+ EN DP
Sbjct: 80 VECGPSEKGEGVENLDP 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,916,974
Number of Sequences: 37544
Number of extensions: 141892
Number of successful extensions: 381
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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