Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L06
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    28   2.1  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    28   2.1  
Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical pr...    26   8.4  

>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -1

Query: 181 KYKLHSLRGLLCAIFRCQQLFYLPFLLVPLDNVFGSQFS---AVSPFSD 44
           K K+HSL+ LL A+F    L +L     P +  F   FS   A+SP S+
Sbjct: 7   KSKIHSLKFLLVAVFMVTCLSHLYSSYYPENFTFKEGFSSHFAISPVSE 55


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -1

Query: 181 KYKLHSLRGLLCAIFRCQQLFYLPFLLVPLDNVFGSQFS---AVSPFSD 44
           K K+HSL+ LL A+F    L +L     P +  F   FS   A+SP S+
Sbjct: 7   KSKIHSLKFLLVAVFMVTCLSHLYSSYYPENFTFKEGFSSHFAISPVSE 55


>Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical
           protein C56G7.3 protein.
          Length = 322

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 94  LDNVFGSQFSAVSPFSDAVHSIVL*EFC 11
           LDN FG++   + PF  A+H+  +  FC
Sbjct: 249 LDN-FGNEIEGLYPFFSALHASAMCRFC 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,210,791
Number of Sequences: 27780
Number of extensions: 143764
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)