Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L05
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 222 1e-59
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 221 3e-59
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 221 5e-59
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 27 1.5
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 3.5
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 3.5
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 3.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 3.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 4.7
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 4.7
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 8.1
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 24 8.1
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 8.1
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 24 8.1
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 222 bits (543), Expect = 1e-59
Identities = 99/134 (73%), Positives = 117/134 (87%)
Frame = +1
Query: 10 LVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIY 189
L++FLRNRLKYAL G EV I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+Y
Sbjct: 44 LIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVY 103
Query: 190 DVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 369
D+KGRFT+HRIT EEAKYKLCKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L+
Sbjct: 104 DIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLN 163
Query: 370 ISTNKIMDFIKFDS 411
+ TNKI FIKFD+
Sbjct: 164 LETNKIESFIKFDT 177
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 221 bits (540), Expect = 3e-59
Identities = 98/134 (73%), Positives = 117/134 (87%)
Frame = +1
Query: 10 LVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIY 189
L++FLRNRLKYAL G EV I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+Y
Sbjct: 44 LIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVY 103
Query: 190 DVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 369
D+KGRFT+HRIT EEAKYKLCKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L+
Sbjct: 104 DIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLN 163
Query: 370 ISTNKIMDFIKFDS 411
+ TNKI FIKFD+
Sbjct: 164 LETNKIESFIKFDT 177
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 221 bits (539), Expect = 5e-59
Identities = 98/134 (73%), Positives = 117/134 (87%)
Frame = +1
Query: 10 LVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIY 189
L++FLRNRLKYAL G EV I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+Y
Sbjct: 44 LIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVY 103
Query: 190 DVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 369
D+KGRFT+HRIT EEAKYKLCKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L+
Sbjct: 104 DIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLN 163
Query: 370 ISTNKIMDFIKFDS 411
+ TNKI FIKFD+
Sbjct: 164 LETNKIESFIKFDT 177
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 339 HQGERLGAARHLHQQDHGLHQV 404
H G LGA +H H + G H V
Sbjct: 175 HHGPTLGAKQHSHSHEDGAHGV 196
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 3.5
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -3
Query: 293 YGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGS 114
YGTLL L L + + + +LP ++ +F ++ T+ G + S
Sbjct: 578 YGTLLMHFEPTYALSRLVSFAPPEVTF--SLPELDFLTSVFNFPLALRNTATRILGIILS 635
Query: 113 VR--TFPSTLMRRCFTILSTS 57
+ T S ++ CFTI+STS
Sbjct: 636 TKDSTRISEVLSSCFTIISTS 656
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 3.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 275 PVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFS 156
P+ RRT L L+ + W F S + RN +FS
Sbjct: 423 PILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFS 462
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 3.5
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -3
Query: 395 KSMILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSL 243
K LL+E+SS E+ T+ S YRS Y L TL L
Sbjct: 661 KIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYNELRNVTTVLGTLDCL 711
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 3.5
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 142 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYL-VTHDGRT 318
+V S+EK N++F + Y+V + + + K+ ++ ++ K+VP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 319 LR 324
L+
Sbjct: 1778 LK 1779
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 10 LVIFLRNRLKYALTGNEVLKIV 75
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 185 IKRNNSFVFSMDTTSINPAGYVGSV 111
+K+ ++ VF +INPA Y G+V
Sbjct: 40 LKKRDTNVFDSVVDTINPASYFGTV 64
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 24.2 bits (50), Expect = 8.1
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -3
Query: 185 IKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITS 9
I RN S+ MD + YV + + S + C + ++LP S YLS R ++ S
Sbjct: 273 ICRNYSY---MDILLSKKSKYVKKLEKYWSIYLSNCKKLGISTLPPSNYLSPNRAELES 328
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 8.1
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 13 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 129
++ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 24.2 bits (50), Expect = 8.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 120 GVSPHFPVHFDETLLHNLKHLIAGERVLEPISQED 16
G P P+ F + L +K G +L PI++ED
Sbjct: 120 GEQPTEPIDFADPPLPEVKRYGEGNWLLPPIAKED 154
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 24.2 bits (50), Expect = 8.1
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 58 EVLKIVKQRLIKVDGKV--RTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 231
EV K+ ++ I+ G DP+Y +D +S+++ + RL+ D + + R+ E
Sbjct: 194 EVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVED---KELMKRVAEE 250
Query: 232 EAKYKLC 252
+C
Sbjct: 251 NIMLTMC 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,469
Number of Sequences: 5004
Number of extensions: 33767
Number of successful extensions: 122
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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