Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L05
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 200 3e-52
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 196 6e-51
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 195 1e-50
03_05_0145 + 21254448-21255488 29 1.1
01_05_0674 - 24187820-24188713,24188809-24189204 29 1.5
10_08_0510 + 18430580-18431781,18433176-18433554 29 1.9
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 29 1.9
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 29 1.9
01_05_0710 + 24492337-24493053 29 1.9
12_01_0843 + 7891622-7892524 28 3.4
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 3.4
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 28 3.4
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 3.4
12_01_0337 - 2591689-2593839 27 5.9
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 5.9
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 27 7.8
08_01_0220 - 1751367-1752854 27 7.8
03_05_0057 + 20350971-20351405 27 7.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 200 bits (489), Expect = 3e-52
Identities = 91/135 (67%), Positives = 110/135 (81%)
Frame = +1
Query: 10 LVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIY 189
L++ LRNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+Y
Sbjct: 60 LILILRNRLKYALTYREVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLY 119
Query: 190 DVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 369
D KGRF +H I E+AK+KLCKVR V G K +P+L T+DGRT+RYPDPLIK ND++++D
Sbjct: 120 DTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKID 179
Query: 370 ISTNKIMDFIKFDSG 414
+ TNKI+DFIKFD G
Sbjct: 180 LETNKIVDFIKFDVG 194
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 196 bits (478), Expect = 6e-51
Identities = 87/135 (64%), Positives = 109/135 (80%)
Frame = +1
Query: 10 LVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIY 189
L++ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+Y
Sbjct: 44 LILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLY 103
Query: 190 DVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 369
D KGRF + + E+AK+KLCKVR V G K +PYL T+DGRT+RYPDPLIK ND++++D
Sbjct: 104 DTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKID 163
Query: 370 ISTNKIMDFIKFDSG 414
+ TNKI+DFIKFD G
Sbjct: 164 LETNKIVDFIKFDVG 178
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 195 bits (476), Expect = 1e-50
Identities = 86/135 (63%), Positives = 109/135 (80%)
Frame = +1
Query: 10 LVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIY 189
L++ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+Y
Sbjct: 44 LILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLY 103
Query: 190 DVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 369
D KGRF + + E+AK+KLCKVR V G K +PYL T+DGRT+RYPDP+IK ND++++D
Sbjct: 104 DTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKID 163
Query: 370 ISTNKIMDFIKFDSG 414
+ TNKI+DFIKFD G
Sbjct: 164 LETNKIVDFIKFDVG 178
>03_05_0145 + 21254448-21255488
Length = 346
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 252 QGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHL 374
+G ARR P++R A A P PA R G HL
Sbjct: 117 KGRARRRTPEQRRPKEAAGNGRARSPSPASAQRRYGGGEHL 157
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 258 AARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQD 386
AA R P A A AP P P+HQ ++ +RH D
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRHATDHD 191
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 389 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 240
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 193 MDYLCKNGRCTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 389 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 240
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 249 VQGAARRDRPQERAVPGDARRAHAPVPG 332
++GA RR R E+A+P + AP PG
Sbjct: 4 LRGAKRRKRQPEKALPAAGQAMPAPAPG 31
>01_05_0710 + 24492337-24493053
Length = 238
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -3
Query: 380 LVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWI 210
L M + T +F L++ + +RPS + LLG + +RR ++ V+RW+
Sbjct: 93 LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRARE----AASVVRWL 145
>12_01_0843 + 7891622-7892524
Length = 300
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 231 RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGE 350
R V G R +P++ A AHAP P P+ G+
Sbjct: 37 RKAVSGSGGGRRGRKPKKAATAATLAPAHAPAPAPSVAGK 76
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 246 AVQGAARRDRPQERAVPGDARRA-HAPVPGPAHQGERLGAA 365
A +G R+ R P DA A HAP P P +G + GAA
Sbjct: 98 APRGRGRKSRRGRPEPPSDAGAAPHAP-PSPPRRGAKKGAA 137
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 27.9 bits (59), Expect = 3.4
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = +3
Query: 234 SQVQAVQGAARRDRPQERAVPGDARRA---HAPVPGPAHQGERLGAARHLHQQDHG 392
++ A G A R RP P A A H P P + +R RH H HG
Sbjct: 53 TETPAADGDAARKRPSAGDAPAPAPLADKRHRPNPPSSGSRDRDRHHRHGHSHSHG 108
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 175 FRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 279
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 311 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 183
P C + Y +L P+A + LH+ + S I + LP S +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 98 TGKCGLTPRTRRDLWTLYPLRKQMSYSV*YMM*KEGSLSTVSHLKKPSTSCAR 256
+GK L R +RDL L RK S ++ + K L + K + SCA+
Sbjct: 2107 SGKSLLVERLKRDLENLKKSRKSASSTLRKALQKAAQLRLMEKEKNKTPSCAK 2159
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 237 QVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLHQVRLR 413
Q Q V + R +ER + R+++ P + + R +RH QDH H R R
Sbjct: 139 QSQRVPKSPLLTREKERKHKDEHRKSY-PKDSHSKEQSRRSPSRHHSSQDHARHHSRSR 196
>08_01_0220 - 1751367-1752854
Length = 495
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Frame = +1
Query: 229 EEAKYKLCKVRRVATGPKSVPY-----------LVTHDGRTLRYPDPL 339
+ A K+C+ R V + P+ P L+ HDGR + PDPL
Sbjct: 190 QPAFMKICQERHVVSTPEKAPAAPLPRSEYLRPLIFHDGRLVGRPDPL 237
>03_05_0057 + 20350971-20351405
Length = 144
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +3
Query: 243 QAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLG 359
Q Q AAR D P R + AP PG A RLG
Sbjct: 29 QPPQAAARPDEAPHHRQPAPDRPSAAPEPGGAGGVARLG 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,621,543
Number of Sequences: 37544
Number of extensions: 247883
Number of successful extensions: 863
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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