Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L04
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   175   6e-45
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   171   9e-44
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   1.2  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   2.8  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   5.0  
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    25   6.6  
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    25   6.6  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   6.6  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   8.7  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   8.7  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  175 bits (425), Expect = 6e-45
 Identities = 95/185 (51%), Positives = 125/185 (67%), Gaps = 4/185 (2%)
 Frame = -2

Query: 591 MGIDINPXHDRKVRRTEVKSQDVXXXXXXXXXXXXXXRTNAKFNQIILRRLFMSRINRPP 412
           MGIDI   H RK +R++  S++V              RT+++FN+ IL+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 411 ISLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 238
           IS+S++A     K  + EG   V+VGTV++D RL TVPK++VAAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGG 120

Query: 237 EILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EHAR 64
           E+LT DQLALRAPTG  TVL++G+++AREA RHFG     P  H  PYVR++G   E AR
Sbjct: 121 EVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERAR 177

Query: 63  PSRRS 49
             R+S
Sbjct: 178 GRRKS 182


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  171 bits (415), Expect = 9e-44
 Identities = 92/185 (49%), Positives = 124/185 (67%), Gaps = 4/185 (2%)
 Frame = -2

Query: 591 MGIDINPXHDRKVRRTEVKSQDVXXXXXXXXXXXXXXRTNAKFNQIILRRLFMSRINRPP 412
           MGIDI   H +K +R++  S++V              RT+++FN+ IL+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 411 ISLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 238
           IS+S++A     K  + +    VVVGTV++D R+ TVPK+++AAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGG 120

Query: 237 EILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EHAR 64
           E+LT DQLALRAPTG  TVLV+G+++AREA RHFG     P  H  PYVR++G   E AR
Sbjct: 121 EVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERAR 177

Query: 63  PSRRS 49
             R+S
Sbjct: 178 GRRKS 182


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 421 PTSDFFVPFGTPHEEAYTRGFDRCSR 344
           P +D F+PF TP  +AY +   R  R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -2

Query: 360 LIAVVVGTVSNDVRLY-TVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKT 184
           L+ +VV  ++NDVRL+  V +  +   H  E   A  L A   +++   +     T  KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752

Query: 183 VLVQGRRNAREAVRHFGPAPG 121
             V+G     EA  + G  PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -2

Query: 195 GRKTVLVQGRRNAREAVRHFGPAPGA-PR 112
           G    L Q RR     V HFG APG+ PR
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPR 872


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 222 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSR 55
           DQ +   P G   V+    R   +  +  G    A RS  KP+++   + H  P+R
Sbjct: 30  DQGSKSHPFGH-AVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTR 84


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 222 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSR 55
           DQ +   P G   V+    R   +  +  G    A RS  KP+++   + H  P+R
Sbjct: 30  DQGSKSHPFGH-AVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTR 84


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -2

Query: 417 PPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 238
           PP+  S L   +   T + L   ++  + +  R+ T+PK+  + L  +  +R  +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 495 CTVLPIVSSTHPET*LRCAELSCRVLD*CRYPSL 596
           C+V  I  STHPE     A+ +C  +   R+P +
Sbjct: 48  CSVFSISLSTHPEW-AELADRACETMKTLRHPCI 80


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 222 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPA 127
           D++  + P G K  + Q ++  R A++H+  A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,061
Number of Sequences: 5004
Number of extensions: 49447
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)