Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L04
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...   193   1e-49
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...   192   2e-49
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...   177   4e-45
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    30   1.3  

>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score =  193 bits (470), Expect = 1e-49
 Identities = 102/189 (53%), Positives = 129/189 (68%), Gaps = 7/189 (3%)
 Frame = -2

Query: 591 MGID-INPXHDRKVRRTEVKSQDVXXXXXXXXXXXXXXRTNAKFNQIILRRLFMSRINRP 415
           MGID +    ++K +RT  +S+DV              RT + FN +IL+RLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60

Query: 414 PISLSRLARHM--KKPTREGL----IAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARI 253
           P+S+ RL R M  K P R  +    IAV+VGTV++D R+Y VP M VAAL  TE ARARI
Sbjct: 61  PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120

Query: 252 LAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHE 73
           + AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG +
Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180

Query: 72  HARPSRRSN 46
             +   R N
Sbjct: 181 FEKARGRRN 189


>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score =  192 bits (468), Expect = 2e-49
 Identities = 100/183 (54%), Positives = 124/183 (67%), Gaps = 1/183 (0%)
 Frame = -2

Query: 591 MGID-INPXHDRKVRRTEVKSQDVXXXXXXXXXXXXXXRTNAKFNQIILRRLFMSRINRP 415
           MGID +    ++K +RT  +S DV              RT + FN +IL+RLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60

Query: 414 PISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 235
           P+SL RLA+ M+    E  IAV+VGTV++D R+  +PKM V AL  TE ARARI+ AGGE
Sbjct: 61  PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119

Query: 234 ILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSR 55
            LTFDQLALRAP G  TVL++G +NAREAVRHFG APG P SHTKPYVR+KG +  +   
Sbjct: 120 CLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARG 179

Query: 54  RSN 46
           R N
Sbjct: 180 RRN 182


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score =  177 bits (432), Expect = 4e-45
 Identities = 102/200 (51%), Positives = 126/200 (63%), Gaps = 18/200 (9%)
 Frame = -2

Query: 591 MGID-INPXHDRKVRRTEVKSQDVXXXXXXXXXXXXXXRTNAKFNQIILRRLFMSRINRP 415
           MGID +    ++K +RT  KS DV              RT + FN +ILRRLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60

Query: 414 PISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 235
           P+SL RL R M+   +E  IAV+VGTV++D R+Y VP M VAAL  TE ARARI+  GGE
Sbjct: 61  PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118

Query: 234 ILTFDQLALRAPTGRKT-----------------VLVQGRRNAREAVRHFGPAPGAPRSH 106
            LTFDQLALRAP G+ T                 VL++G +NAREAV+HFGPAPG P S+
Sbjct: 119 CLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSN 178

Query: 105 TKPYVRTKGHEHARPSRRSN 46
           TKPYVR+KG +  +   R N
Sbjct: 179 TKPYVRSKGRKFEKARGRRN 198


>06_03_1313 -
           29252335-29252446,29253430-29253671,29253770-29253848,
           29254991-29255130,29255262-29255571,29255810-29255952,
           29256106-29256306,29256453-29256581,29256921-29257199,
           29258036-29259720,29261255-29261764,29261901-29262108,
           29264347-29264458,29264594-29264763
          Length = 1439

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 286 CGYCHFRNS--VKPHIIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQSP 447
           C Y H R S  V  H   +C N++      C   HV C+  +  RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,731,015
Number of Sequences: 37544
Number of extensions: 378023
Number of successful extensions: 1048
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)