Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L04
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   207   4e-54
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  207 bits (506), Expect = 4e-54
 Identities = 107/183 (58%), Positives = 128/183 (69%), Gaps = 2/183 (1%)
 Frame = -2

Query: 591 MGIDINPXHDRKVRRTEVKSQDVXXXXXXXXXXXXXXRTNAKFNQIILRRLFMSRINRPP 412
           MGIDIN  HDR  RRT  KS++               RT  KFN I+L+RL MSR NR P
Sbjct: 1   MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQP 60

Query: 411 ISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 232
           +SL++LAR ++K   E    V + TV++D RLYTVPK++VAALHVTE ARARILAAGGEI
Sbjct: 61  LSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEI 120

Query: 231 LTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EHARPS 58
           +T DQLAL++P G  TV +QG R+AREA +HFGPAPG P SHTKPYVR+KG   E AR  
Sbjct: 121 ITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRKFERARGR 180

Query: 57  RRS 49
           R S
Sbjct: 181 RAS 183


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +2

Query: 278 TCSAATVILGTV*SLTSLETVPTTTAIKPSRVGFFMWRAKRDKEI 412
           T S +TV +G+  + TS  ++ TT+A KPS    FM+   + KEI
Sbjct: 615 TSSGSTVTVGSTEASTSGSSLATTSAPKPSVTCLFMYDT-QSKEI 658


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +2

Query: 278 TCSAATVILGTV*SLTSLETVPTTTAIKPSRVGFFMWRAKRDKEI 412
           T S +TV +G+  + TS  ++ TT+A KPS    FM+   + KEI
Sbjct: 822 TSSGSTVTVGSTEASTSGSSLATTSAPKPSVTCLFMYDT-QSKEI 865


>Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical
           protein M03C11.4 protein.
          Length = 541

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 42  RHWSDGSAVRARVPWCARMV*YVNEVHQAPARSDELPHEHYGDPEPVLSY 191
           R+ SDG AV  ++ +   M     E+  AP    E+ ++H+GD E +  Y
Sbjct: 144 RYISDGLAV-VKMTFLKNM----QEISTAPRYEPEMVYQHFGDEETIFGY 188


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 265  SFLSNV*CGYCHFRNSVKPHIIGDCANDYSDQTLAC-RLLHVACQTGQRNRRSVDTA 432
            S+L+N   G+C   NSV P       +D S Q  AC +   V+C  G   R    +A
Sbjct: 933  SYLANAFQGFCCTANSVCPDNADYLIDDQSQQPRACTQGTFVSCPNGYACRSLTSSA 989


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,454,545
Number of Sequences: 27780
Number of extensions: 303671
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)