Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L03
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942...    27   8.6  
03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,256...    27   8.6  

>08_02_1578 -
           27992848-27992893,27993431-27993515,27994107-27994240,
           27994579-27994640,27994736-27994831,27994952-27995023
          Length = 164

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 310 YFKTIIYHRTRMIIIVSENDDVSKGRGG 227
           Y+  +I+HR     IV   D    GRGG
Sbjct: 45  YYDNVIFHRIIKDFIVQGGDPTGTGRGG 72


>03_01_0330 +
           2566662-2566740,2566821-2566911,2567003-2567057,
           2567166-2567297,2567517-2567567,2567769-2567840,
           2568590-2568680,2568988-2569066,2569147-2569210,
           2569917-2570020,2570182-2570287,2572080-2572157,
           2572649-2572801,2573039-2573128,2573284-2573349,
           2573485-2573583,2573660-2573734,2574455-2574514,
           2574909-2574998,2575202-2575323,2575462-2575591,
           2575662-2575741,2576167-2576302,2577005-2577086,
           2578475-2578620,2578796-2578876,2578994-2579094,
           2579770-2580008,2580100-2580209,2580518-2580646,
           2580728-2580802,2581455-2581586,2582298-2582470,
           2582566-2582688,2582771-2582831,2582910-2583005,
           2583251-2583351,2584014-2584119,2584673-2584786,
           2584888-2584962,2585619-2585711,2585883-2585954,
           2586253-2586338,2586434-2586527,2586596-2586703,
           2586782-2587021
          Length = 1579

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 187 RSRLLSKLKYF--TTIQLINQLKTISFSASHSLHTFII*NTSSLFTTSPFVL 38
           RS+L S L     T + L  + + I+F ASHSLH  +  N S L  + P +L
Sbjct: 256 RSQLKSALPRIIPTMLDLCRKDQEIAFVASHSLHNLL--NASLLSESGPPLL 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,484,135
Number of Sequences: 37544
Number of extensions: 201315
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)